Variant report

Variant	rs35738079
Chromosome Location	chr6:44114249-44114250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44112467..44115418-chr6:44279171..44281157,2	K562	blood:
2	chr6:44113768..44117098-chr6:44117855..44119857,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10428726	0.93[ASN][1000 genomes]
rs10807295	0.93[ASN][1000 genomes]
rs10948122	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10948123	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10948125	0.93[ASN][1000 genomes]
rs10948126	0.93[ASN][1000 genomes]
rs11966587	0.90[ASN][1000 genomes]
rs11967633	0.93[ASN][1000 genomes]
rs11968386	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12525049	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12526662	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12664793	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2096200	0.93[ASN][1000 genomes]
rs3087926	0.85[AMR][1000 genomes]
rs41282654	0.90[ASN][1000 genomes]
rs4711765	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714744	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714749	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55862642	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59028814	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60245793	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60691447	0.90[ASN][1000 genomes]
rs6912142	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700006	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs713050	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73733834	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7738970	0.93[ASN][1000 genomes]
rs7771710	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462935	chr6:44046143-44117607	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv603002	chr6:44046143-44117607	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44096600-44119400	Weak transcription	Right Atrium	heart
2	chr6:44096800-44119400	Weak transcription	HUVEC	blood vessel
3	chr6:44098000-44114800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:44098000-44119400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:44098000-44119400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:44100400-44119000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:44101200-44119400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:44101400-44119400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:44101600-44118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:44101800-44119200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:44101800-44124000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:44102000-44115200	Weak transcription	Small Intestine	intestine
13	chr6:44102000-44117600	Weak transcription	Fetal Heart	heart
14	chr6:44102000-44118600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:44102000-44119400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:44102200-44117800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:44102200-44118000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:44102200-44118400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:44102200-44119800	Strong transcription	Fetal Intestine Small	intestine
20	chr6:44102400-44118000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:44102400-44118000	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr6:44102400-44118200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:44102400-44118200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:44102400-44119400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:44102600-44119000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:44103000-44118600	Strong transcription	Fetal Intestine Large	intestine
27	chr6:44103600-44119200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:44103600-44119400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:44103600-44119400	Strong transcription	Fetal Muscle Leg	muscle
30	chr6:44103800-44124600	Strong transcription	Fetal Stomach	stomach
31	chr6:44104800-44118800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:44105400-44116400	Weak transcription	Fetal Kidney	kidney
33	chr6:44106400-44118600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr6:44106800-44119400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:44107200-44117800	Strong transcription	Osteobl	bone
36	chr6:44107200-44119000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:44107400-44118200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:44108200-44114400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:44108600-44122600	Weak transcription	A549	lung
40	chr6:44109000-44114600	Weak transcription	Aorta	Aorta
41	chr6:44109000-44115200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:44109200-44114600	Weak transcription	Thymus	Thymus
43	chr6:44109200-44119200	Weak transcription	Stomach Mucosa	stomach
44	chr6:44109400-44114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:44109400-44115200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:44109600-44114800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:44109800-44115000	Weak transcription	Psoas Muscle	Psoas
48	chr6:44109800-44124200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:44110400-44114800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:44110400-44118200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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