The 2.0 version of rSNPBase

Variant report

Variant rs55862642
Chromosome Location chr6:44098672-44098673
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:44096400-44100000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr6:44096400-44100000 Weak transcription Small Intestine intestine
3 chr6:44096400-44101200 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr6:44096400-44106600 Weak transcription Aorta Aorta
5 chr6:44096600-44099600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr6:44096600-44099600 Weak transcription Fetal Intestine Large intestine
7 chr6:44096600-44099600 Weak transcription Lung lung
8 chr6:44096600-44099600 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr6:44096600-44099800 Weak transcription Psoas Muscle Psoas
10 chr6:44096600-44100600 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr6:44096600-44100600 Weak transcription Brain Hippocampus Middle brain
12 chr6:44096600-44100800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr6:44096600-44100800 Weak transcription Primary B cells from peripheral blood blood
14 chr6:44096600-44101200 Weak transcription Hela-S3 cervix
15 chr6:44096600-44101400 Weak transcription Primary monocytes fromperipheralblood blood
16 chr6:44096600-44101400 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr6:44096600-44102400 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr6:44096600-44102400 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr6:44096600-44102400 Weak transcription HSMMtube muscle
20 chr6:44096600-44103200 Weak transcription Primary B cells from cord blood blood
21 chr6:44096600-44107200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr6:44096600-44107400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr6:44096600-44119400 Weak transcription Right Atrium heart
24 chr6:44096800-44099000 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr6:44096800-44099400 Weak transcription Colonic Mucosa Colon
26 chr6:44096800-44099600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr6:44096800-44099600 Weak transcription Fetal Intestine Small intestine
28 chr6:44096800-44099600 Weak transcription Fetal Muscle Trunk muscle
29 chr6:44096800-44099600 Weak transcription Gastric stomach
30 chr6:44096800-44099600 Weak transcription A549 lung
31 chr6:44096800-44099800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr6:44096800-44099800 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr6:44096800-44099800 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr6:44096800-44099800 Weak transcription Esophagus oesophagus
35 chr6:44096800-44100000 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr6:44096800-44100000 Weak transcription Placenta Placenta
37 chr6:44096800-44100200 Strong transcription Fetal Stomach stomach
38 chr6:44096800-44100400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr6:44096800-44100400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr6:44096800-44100400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr6:44096800-44100400 Weak transcription Adipose Nuclei Adipose
42 chr6:44096800-44100400 Weak transcription Brain Inferior Temporal Lobe brain
43 chr6:44096800-44100400 Weak transcription Fetal Lung lung
44 chr6:44096800-44100600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr6:44096800-44100600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr6:44096800-44100600 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr6:44096800-44100600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr6:44096800-44100600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr6:44096800-44100600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr6:44096800-44100600 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015