Variant report

Variant	rs35738819
Chromosome Location	chr15:42966288-42966289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42960672..42962590-chr15:42963179..42966511,3	K562	blood:
2	chr15:42957477..42963934-chr15:42964860..42973083,9	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10400824	0.80[EUR][1000 genomes]
rs1058846	0.81[EUR][1000 genomes]
rs11638835	0.80[EUR][1000 genomes]
rs12102055	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594483	0.96[AFR][1000 genomes]
rs12594855	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12902830	0.82[EUR][1000 genomes]
rs12903762	0.86[EUR][1000 genomes]
rs12905592	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12906497	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12907826	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12911585	0.81[EUR][1000 genomes]
rs12917018	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12917189	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16957091	0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16957104	0.93[AFR][1000 genomes]
rs17774047	0.81[EUR][1000 genomes]
rs1915241	0.82[AFR][1000 genomes]
rs1995939	0.96[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2136899	0.87[EUR][1000 genomes]
rs2136901	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2136903	0.80[ASN][1000 genomes]
rs2175370	0.91[EUR][1000 genomes]
rs2280048	0.96[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2412740	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2412741	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28479391	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28549876	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs28798437	0.80[EUR][1000 genomes]
rs3199486	0.96[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34070722	0.88[EUR][1000 genomes]
rs34191150	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34603230	0.93[EUR][1000 genomes]
rs35392023	0.82[EUR][1000 genomes]
rs35616173	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3742987	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3742988	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3742993	0.89[EUR][1000 genomes]
rs4265781	0.81[ASN][1000 genomes]
rs4545789	0.93[EUR][1000 genomes]
rs4923950	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4924690	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4924691	0.81[EUR][1000 genomes]
rs4924692	0.94[EUR][1000 genomes]
rs4924694	0.87[EUR][1000 genomes]
rs57298545	0.94[EUR][1000 genomes]
rs58938096	0.86[EUR][1000 genomes]
rs61122145	0.82[EUR][1000 genomes]
rs6493060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493061	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66681258	0.81[EUR][1000 genomes]
rs672054	0.86[EUR][1000 genomes]
rs71474496	0.82[EUR][1000 genomes]
rs7163030	0.84[EUR][1000 genomes]
rs7166373	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7166775	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7169009	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7169202	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7174041	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7176860	0.85[EUR][1000 genomes]
rs7182479	0.91[EUR][1000 genomes]
rs7183487	0.86[EUR][1000 genomes]
rs731984	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8023524	0.80[EUR][1000 genomes]
rs8024902	0.93[EUR][1000 genomes]
rs8026233	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8027427	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8030587	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8031218	0.91[EUR][1000 genomes]
rs8034447	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8034664	0.81[ASN][1000 genomes]
rs8039711	0.93[EUR][1000 genomes]
rs8039765	0.94[EUR][1000 genomes]
rs8043472	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs938047	0.94[EUR][1000 genomes]
rs9944248	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
3	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:42925200-42966800	Weak transcription	NHLF	lung
5	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:42931800-42968000	Weak transcription	HSMM	muscle
8	chr15:42940400-42967800	Weak transcription	HepG2	liver
9	chr15:42942800-42967200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:42942800-42973600	Weak transcription	Psoas Muscle	Psoas
11	chr15:42945200-42973400	Weak transcription	Thymus	Thymus
12	chr15:42949800-42999200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:42950000-42969400	Weak transcription	K562	blood
14	chr15:42950400-42990200	Strong transcription	Fetal Stomach	stomach
15	chr15:42951000-42995000	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:42952200-42973400	Weak transcription	Gastric	stomach
17	chr15:42952400-42970800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:42952600-42979000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:42952600-42995600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:42952800-42967000	Weak transcription	Right Ventricle	heart
21	chr15:42952800-42996000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:42953200-42970000	Strong transcription	Adipose Nuclei	Adipose
23	chr15:42953200-42970200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr15:42953400-42992200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:42953600-42967800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:42954000-42970000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:42954200-42973600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:42954400-42976200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr15:42954600-42986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:42954800-42983000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:42955000-42967000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:42955000-42990200	Strong transcription	Fetal Muscle Leg	muscle
33	chr15:42955200-42974000	Weak transcription	Esophagus	oesophagus
34	chr15:42956000-42967600	Weak transcription	Fetal Lung	lung
35	chr15:42956000-42976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:42956200-42966400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:42956800-42973600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:42957000-42976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:42958600-42966600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:42958800-42966600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:42958800-42966800	Weak transcription	Aorta	Aorta
42	chr15:42958800-42967600	Weak transcription	HUVEC	blood vessel
43	chr15:42960000-42973400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:42960000-42981800	Strong transcription	Primary T cells from cord blood	blood
45	chr15:42960200-42973800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:42960600-42968600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:42961000-42977600	Weak transcription	Small Intestine	intestine
48	chr15:42961200-42973800	Weak transcription	Fetal Thymus	thymus
49	chr15:42961200-42989200	Strong transcription	Ovary	ovary
50	chr15:42961400-42990800	Strong transcription	Colon Smooth Muscle	Colon

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