Variant report

Variant	rs35740768
Chromosome Location	chr7:127027669-127027670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127007429..127009015-chr7:127025280..127028276,2	MCF-7	breast:
2	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
3	chr7:127011822..127013678-chr7:127027337..127029022,2	MCF-7	breast:
4	chr7:127018682..127020329-chr7:127027306..127029620,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000004059	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction

rs_ID	r²[population]
rs34441467	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34981624	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35596688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71578237	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
10	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
11	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
13	chr7:127001600-127031400	Weak transcription	Gastric	stomach
14	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
16	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
17	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
20	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
23	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
27	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
28	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
30	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:127015000-127031400	Weak transcription	Lung	lung
32	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
33	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
35	chr7:127022200-127031200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:127022600-127030200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:127023000-127030600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr7:127023400-127027800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:127023600-127030000	Weak transcription	NH-A	brain
40	chr7:127023600-127030200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:127023600-127031200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:127023600-127031200	Weak transcription	Stomach Mucosa	stomach
43	chr7:127023600-127031200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr7:127023600-127031400	Weak transcription	Fetal Muscle Leg	muscle
45	chr7:127023800-127028200	Weak transcription	Hela-S3	cervix
46	chr7:127023800-127030200	Weak transcription	NHEK	skin
47	chr7:127023800-127030600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:127023800-127031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:127023800-127031200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:127023800-127031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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