Variant report

Variant	rs357414
Chromosome Location	chr7:138036256-138036257
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138030718..138033704-chr7:138034861..138038720,3	K562	blood:
2	chr7:137941053..137942559-chr7:138036086..138038896,2	K562	blood:
3	chr7:138035919..138038912-chr7:138143414..138146146,5	K562	blood:
4	chr7:137587919..137589974-chr7:138035321..138037174,2	K562	blood:
5	chr7:138035941..138037623-chr7:138143502..138146608,3	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11983566	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357381	0.81[ASN][1000 genomes]
rs357383	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357386	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357404	0.83[ASN][1000 genomes]
rs357411	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs357412	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs357421	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357427	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357435	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs357437	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs357445	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357451	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357454	0.84[ASN][1000 genomes]
rs357456	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs357457	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs367783	0.83[ASN][1000 genomes]
rs373613	0.82[ASN][1000 genomes]
rs375018	0.83[ASN][1000 genomes]
rs380650	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs392162	0.86[ASN][1000 genomes]
rs402358	0.84[ASN][1000 genomes]
rs402486	0.81[ASN][1000 genomes]
rs409813	0.84[ASN][1000 genomes]
rs424605	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs427954	0.84[ASN][1000 genomes]
rs428488	0.84[ASN][1000 genomes]
rs429103	0.84[ASN][1000 genomes]
rs447273	0.85[ASN][1000 genomes]
rs449239	0.81[ASN][1000 genomes]
rs690193	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs357414	TRIM24	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138034400-138038800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138034600-138036800	ZNF genes & repeats	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links