Variant report

Variant	rs373613
Chromosome Location	chr7:137986938-137986939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137978354..137980372-chr7:137985691..137988661,2	K562	blood:
2	chr7:137978354..137980840-chr7:137985937..137988661,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11983566	0.94[ASN][1000 genomes]
rs1643164	0.91[ASN][1000 genomes]
rs357371	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs357372	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357381	0.90[ASN][1000 genomes]
rs357382	0.89[ASN][1000 genomes]
rs357383	0.94[ASN][1000 genomes]
rs357386	0.94[ASN][1000 genomes]
rs357411	0.81[ASN][1000 genomes]
rs357412	0.80[ASN][1000 genomes]
rs357414	0.82[ASN][1000 genomes]
rs357421	0.82[ASN][1000 genomes]
rs357427	0.82[ASN][1000 genomes]
rs357428	0.82[ASN][1000 genomes]
rs357435	0.89[ASN][1000 genomes]
rs357437	0.89[ASN][1000 genomes]
rs357445	0.91[ASN][1000 genomes]
rs357451	0.91[ASN][1000 genomes]
rs357454	0.88[ASN][1000 genomes]
rs357456	0.93[ASN][1000 genomes]
rs357457	0.93[ASN][1000 genomes]
rs367783	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370275	0.92[ASN][1000 genomes]
rs375018	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs380650	0.94[ASN][1000 genomes]
rs382122	0.88[ASN][1000 genomes]
rs385127	0.88[ASN][1000 genomes]
rs392162	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs396918	0.93[ASN][1000 genomes]
rs397203	0.94[ASN][1000 genomes]
rs398970	0.91[ASN][1000 genomes]
rs399486	0.91[ASN][1000 genomes]
rs402228	0.93[ASN][1000 genomes]
rs402358	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs402486	0.94[ASN][1000 genomes]
rs407687	0.92[ASN][1000 genomes]
rs409813	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs424605	0.94[ASN][1000 genomes]
rs427954	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs428488	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs429103	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs431358	0.92[ASN][1000 genomes]
rs432187	0.92[ASN][1000 genomes]
rs446384	0.89[ASN][1000 genomes]
rs447273	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs449239	0.89[ASN][1000 genomes]
rs60969	0.92[ASN][1000 genomes]
rs689683	0.91[ASN][1000 genomes]
rs690193	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517949	chr7:137962186-137992969	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137981800-137988200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137983200-137988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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