Variant report

Variant	rs35743012
Chromosome Location	chr2:113371982-113371983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHCHD5-2	chr2:113371790-113372008	ENSG00000243389.1

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11677284	0.81[EUR][1000 genomes]
rs11678996	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12476928	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13023016	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3088301	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849316	0.98[ASN][1000 genomes]
rs3849317	0.98[ASN][1000 genomes]
rs3980075	0.99[ASN][1000 genomes]
rs4547533	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4848284	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4849078	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4849079	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4849083	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4849084	0.81[EUR][1000 genomes]
rs6542065	0.98[ASN][1000 genomes]
rs6542066	0.97[ASN][1000 genomes]
rs6542067	0.97[ASN][1000 genomes]
rs6542068	0.91[ASN][1000 genomes]
rs6724434	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6740202	0.97[ASN][1000 genomes]
rs6758898	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7559385	0.91[ASN][1000 genomes]
rs908545	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874877	chr2:113287964-113382054	Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv458997	chr2:113313794-113431092	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv582708	chr2:113313794-113431092	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113346800-113374600	Weak transcription	Ovary	ovary
2	chr2:113348600-113383600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:113349000-113384000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:113357800-113375200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:113357800-113384200	Weak transcription	Pancreas	Pancrea
6	chr2:113358000-113384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:113359800-113372000	Weak transcription	Fetal Brain Female	brain
8	chr2:113364600-113372800	Weak transcription	Fetal Stomach	stomach
9	chr2:113365600-113372000	Weak transcription	Brain Anterior Caudate	brain
10	chr2:113370000-113372200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:113370400-113383800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:113370600-113377800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:113371000-113372000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:113371400-113372000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:113371600-113372000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:113371600-113372200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:113371600-113372800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:113371600-113372800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:113371600-113372800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:113371600-113374000	Enhancers	HepG2	liver
21	chr2:113371600-113382000	Weak transcription	Spleen	Spleen
22	chr2:113371800-113372000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:113371800-113372000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr2:113371800-113372000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr2:113371800-113372000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:113371800-113372200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:113371800-113372200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr2:113371800-113372200	Enhancers	Fetal Intestine Small	intestine
29	chr2:113371800-113372200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr2:113371800-113372400	Genic enhancers	Gastric	stomach
31	chr2:113371800-113372600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:113371800-113372600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:113371800-113373000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:113371800-113373200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr2:113371800-113373200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr2:113371800-113373200	Strong transcription	Brain Germinal Matrix	brain

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