Variant report

Variant	rs6758898
Chromosome Location	chr2:113382684-113382685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:113381912-113382814	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr2:113381902-113382706	U87	brain:	n/a	n/a
3	POLR2A	chr2:113381902-113382982	U87	brain:	n/a	n/a
4	MAZ	chr2:113381766-113382687	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:113381929..113384460-chr2:113482679..113485995,5	MCF-7	breast:
2	chr2:113379636..113386577-chr2:113398111..113406278,16	MCF-7	breast:
3	chr2:113340704..113344392-chr2:113381565..113384382,5	MCF-7	breast:
4	chr2:113380240..113386960-chr2:113401832..113406779,10	MCF-7	breast:
5	chr2:113380970..113385799-chr2:113479613..113484625,8	K562	blood:
6	chr2:113382212..113385648-chr2:113390770..113393800,3	MCF-7	breast:
7	chr2:113380843..113384962-chr2:113480402..113484110,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000231747	TF binding region
ENSG00000144136	Chromatin interaction
ENSG00000144130	Chromatin interaction
ENSG00000125611	Chromatin interaction
ENSG00000237753	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11676691	0.91[EUR][1000 genomes]
rs11677284	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11678996	0.80[EUR][1000 genomes]
rs3088301	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35743012	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3849316	0.93[ASN][1000 genomes]
rs3849317	0.93[ASN][1000 genomes]
rs3980075	0.91[ASN][1000 genomes]
rs4848284	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849078	0.87[ASN][1000 genomes]
rs4849079	0.91[ASN][1000 genomes]
rs4849083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849084	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62158654	0.86[EUR][1000 genomes]
rs6542065	0.90[ASN][1000 genomes]
rs6542066	0.94[ASN][1000 genomes]
rs6542067	0.95[ASN][1000 genomes]
rs6542068	0.99[ASN][1000 genomes]
rs6740202	0.89[ASN][1000 genomes]
rs7559385	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458997	chr2:113313794-113431092	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv582708	chr2:113313794-113431092	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv470480	chr2:113373950-113429752	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113348600-113383600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:113349000-113384000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:113357800-113384200	Weak transcription	Pancreas	Pancrea
4	chr2:113358000-113384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:113370400-113383800	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:113372200-113384200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:113372400-113384000	Weak transcription	Brain Anterior Caudate	brain
8	chr2:113372400-113388600	Weak transcription	Gastric	stomach
9	chr2:113372800-113388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:113373000-113383200	Weak transcription	Fetal Brain Female	brain
11	chr2:113373200-113384000	Weak transcription	Brain Germinal Matrix	brain
12	chr2:113377400-113384200	Weak transcription	Right Atrium	heart
13	chr2:113378800-113384000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:113379800-113384200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:113379800-113387600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:113380000-113384000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:113380200-113387600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:113380400-113384200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:113380400-113387600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr2:113380800-113388400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:113381000-113384200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr2:113381000-113384400	Enhancers	NHLF	lung
23	chr2:113381400-113384200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:113381400-113384200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr2:113381400-113384200	Enhancers	HUVEC	blood vessel
26	chr2:113381400-113388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:113381600-113382800	Flanking Active TSS	NHEK	skin
28	chr2:113381600-113383400	Enhancers	Primary B cells from peripheral blood	blood
29	chr2:113381600-113384000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:113381600-113384000	Enhancers	A549	lung
31	chr2:113381600-113384000	Enhancers	NH-A	brain
32	chr2:113381600-113384200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr2:113381600-113384200	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr2:113381600-113384200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr2:113381600-113384200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr2:113381600-113384200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr2:113381600-113384200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr2:113381600-113384200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr2:113381600-113384200	Enhancers	HSMMtube	muscle
40	chr2:113381600-113384200	Enhancers	NHDF-Ad	bronchial
41	chr2:113381600-113386000	Enhancers	Primary hematopoietic stem cells	blood
42	chr2:113381600-113388200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr2:113381600-113389600	Enhancers	Placenta	Placenta
44	chr2:113381800-113383000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:113381800-113384000	Enhancers	Osteobl	bone
46	chr2:113381800-113384200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:113381800-113385200	Flanking Active TSS	Hela-S3	cervix
48	chr2:113382000-113382800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:113382000-113384000	Enhancers	HSMM	muscle
50	chr2:113382000-113385800	Enhancers	Placenta Amnion	Placenta Amnion

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