Variant report

Variant	rs357544
Chromosome Location	chr9:98142757-98142758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10993543	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs357520	0.84[EUR][1000 genomes]
rs357523	0.82[EUR][1000 genomes]
rs357526	0.84[EUR][1000 genomes]
rs357527	0.82[AMR][1000 genomes]
rs357530	0.82[AMR][1000 genomes]
rs357531	0.82[AMR][1000 genomes]
rs357535	0.82[AMR][1000 genomes]
rs357537	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs357541	0.82[AMR][1000 genomes]
rs357542	0.86[ASN][1000 genomes]
rs357543	0.86[ASN][1000 genomes]
rs357545	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs357556	0.81[EUR][1000 genomes]
rs357560	0.83[EUR][1000 genomes]
rs357561	0.80[EUR][1000 genomes]
rs357562	0.83[EUR][1000 genomes]
rs419574	0.82[AMR][1000 genomes]
rs613040	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98136400-98143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:98139400-98147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:98142200-98143200	Enhancers	A549	lung
4	chr9:98142400-98144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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