Variant report

Variant	rs357526
Chromosome Location	chr9:98188625-98188626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98187644..98190286-chr9:98266151..98268622,2	K562	blood:
2	chr9:98187685..98192036-chr9:98266677..98274746,12	MCF-7	breast:
3	chr6:10416020..10416818-chr9:98188608..98189163,2	Hela-S3	cervix:
4	chr9:98186276..98191956-chr9:98269234..98276633,9	K562	blood:
5	chr9:98187259..98193172-chr9:98208629..98217669,12	MCF-7	breast:
6	chr9:98167871..98172268-chr9:98186784..98190412,5	MCF-7	breast:
7	chr9:98173730..98177988-chr9:98187520..98191004,5	K562	blood:
8	chr9:98173705..98177734-chr9:98187506..98190870,3	MCF-7	breast:
9	chr9:98187278..98190652-chr9:98265637..98273315,6	K562	blood:
10	chr9:98187335..98191305-chr9:98637767..98639481,3	MCF-7	breast:
11	chr9:98079206..98081701-chr9:98186785..98188899,2	K562	blood:
12	chr9:98174491..98183187-chr9:98187141..98190074,10	K562	blood:
13	chr9:98188569..98190136-chr9:98266994..98268557,2	MCF-7	breast:
14	chr9:98187696..98190762-chr9:98268567..98271378,5	MCF-7	breast:
15	chr9:98077890..98080706-chr9:98186785..98188874,2	K562	blood:
16	chr9:98171235..98175849-chr9:98186797..98190089,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000271384	Chromatin interaction
ENSG00000182150	Chromatin interaction
ENSG00000175611	Chromatin interaction
ENSG00000185920	Chromatin interaction
ENSG00000213761	Chromatin interaction
ENSG00000271155	Chromatin interaction
ENSG00000137203	Chromatin interaction
ENSG00000271659	Chromatin interaction
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10993543	0.95[EUR][1000 genomes]
rs357520	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs357523	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs357524	0.84[EUR][1000 genomes]
rs357525	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs357530	0.81[EUR][1000 genomes]
rs357531	0.81[EUR][1000 genomes]
rs357535	0.81[EUR][1000 genomes]
rs357537	0.95[EUR][1000 genomes]
rs357541	0.80[EUR][1000 genomes]
rs357544	0.84[EUR][1000 genomes]
rs357545	0.84[EUR][1000 genomes]
rs357556	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs357560	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs357561	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs357562	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs419574	0.81[EUR][1000 genomes]
rs57247461	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58831996	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs613040	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61652825	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98187800-98190000	Active TSS	A549	lung
2	chr9:98188000-98188800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr9:98188000-98189000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr9:98188000-98189000	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr9:98188000-98189400	Active TSS	GM12878-XiMat	blood
6	chr9:98188000-98189400	Active TSS	K562	blood
7	chr9:98188000-98189600	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr9:98188000-98189600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:98188000-98189800	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr9:98188200-98188800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:98188200-98188800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr9:98188200-98188800	Flanking Active TSS	Liver	Liver
13	chr9:98188200-98189000	Flanking Active TSS	Fetal Intestine Small	intestine
14	chr9:98188200-98189000	Flanking Active TSS	Fetal Thymus	thymus
15	chr9:98188200-98189000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr9:98188200-98189200	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr9:98188200-98189200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr9:98188200-98189400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:98188200-98189400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:98188200-98189400	Enhancers	Fetal Brain Male	brain
21	chr9:98188200-98189600	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr9:98188200-98189800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:98188200-98189800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:98188200-98189800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:98188200-98190000	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr9:98188400-98188800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:98188400-98188800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr9:98188400-98188800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:98188400-98188800	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr9:98188400-98188800	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr9:98188400-98188800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr9:98188400-98188800	Flanking Active TSS	Fetal Lung	lung
33	chr9:98188400-98188800	Flanking Active TSS	Fetal Stomach	stomach
34	chr9:98188400-98188800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr9:98188400-98188800	Enhancers	Stomach Mucosa	stomach
36	chr9:98188400-98188800	Flanking Active TSS	HSMM	muscle
37	chr9:98188400-98188800	Flanking Active TSS	HSMMtube	muscle
38	chr9:98188400-98188800	Flanking Active TSS	NHLF	lung
39	chr9:98188400-98189000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:98188400-98189000	Enhancers	Primary hematopoietic stem cells	blood
41	chr9:98188400-98189000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr9:98188400-98189000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:98188400-98189000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:98188400-98189000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:98188400-98189000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr9:98188400-98189000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr9:98188400-98189000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr9:98188400-98189000	Flanking Bivalent TSS/Enh	Thymus	Thymus
49	chr9:98188400-98189000	Bivalent/Poised TSS	HepG2	liver
50	chr9:98188400-98189000	Flanking Active TSS	NH-A	brain

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