Variant report

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr9:98192509-98193100	U2OS	brain:	n/a	n/a
2	CBX3	chr9:98192532-98192911	K562	blood:	n/a	n/a
3	KAP1	chr9:98192404-98193018	HEK293	kidney:	n/a	n/a
4	KAP1	chr9:98192490-98193462	K562	blood:	n/a	n/a
5	BHLHE40	chr9:98192263-98192617	HepG2	liver:	n/a	n/a
6	CBX3	chr9:98192442-98192998	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98187259..98193172-chr9:98208629..98217669,12	MCF-7	breast:
2	chr9:98176993..98179487-chr9:98191596..98193512,2	MCF-7	breast:
3	chr9:98190412..98192872-chr9:98202167..98205058,2	K562	blood:
4	chr9:98191617..98194245-chr9:98268185..98270096,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16909856	0.82[EUR][1000 genomes]
rs16909859	0.82[EUR][1000 genomes]
rs16909865	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28421389	0.91[EUR][1000 genomes]
rs28485160	0.84[EUR][1000 genomes]
rs28517704	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28563972	0.90[EUR][1000 genomes]
rs28615951	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs357520	0.84[AMR][1000 genomes]
rs357523	0.87[AMR][1000 genomes]
rs357525	0.92[ASN][1000 genomes]
rs357526	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs357530	1.00[AFR][1000 genomes]
rs357531	1.00[AFR][1000 genomes]
rs357535	1.00[AFR][1000 genomes]
rs357541	1.00[AFR][1000 genomes]
rs357545	1.00[AFR][1000 genomes]
rs357555	1.00[AFR][1000 genomes]
rs357556	0.87[AMR][1000 genomes]
rs357560	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs357561	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs357562	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs419574	1.00[AFR][1000 genomes]
rs58831996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60608001	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs613040	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61652825	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189400-98196600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr9:98189400-98197400	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:98189600-98192600	Weak transcription	Fetal Lung	lung
4	chr9:98189600-98196400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
6	chr9:98189800-98193400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:98189800-98206600	Weak transcription	Pancreas	Pancrea
8	chr9:98192200-98193200	ZNF genes & repeats	K562	blood
9	chr9:98192400-98194600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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