Variant report

Variant	rs28615951
Chromosome Location	chr9:98196823-98196824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98195671..98199206-chr9:98203414..98207469,4	K562	blood:
2	chr9:98195063..98197090-chr9:98200998..98203192,2	K562	blood:
3	chr9:98194162..98198925-chr9:98199539..98203355,6	K562	blood:
4	chr9:98192831..98199026-chr9:98270440..98274596,9	K562	blood:
5	chr9:98195732..98198631-chr9:98215123..98217873,2	K562	blood:
6	chr9:98184923..98187907-chr9:98195296..98197240,2	K562	blood:
7	chr9:98193214..98197304-chr9:98277800..98280363,5	K562	blood:
8	chr9:98195217..98199748-chr9:98266921..98269670,5	K562	blood:
9	chr9:98195217..98198103-chr9:98267041..98269977,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction
ENSG00000271155	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16909856	0.87[EUR][1000 genomes]
rs16909859	0.87[EUR][1000 genomes]
rs16909865	0.89[EUR][1000 genomes]
rs28421389	0.96[EUR][1000 genomes]
rs28485160	0.88[EUR][1000 genomes]
rs28517704	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28563972	0.94[EUR][1000 genomes]
rs357520	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs357523	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs357524	0.84[ASN][1000 genomes]
rs57247461	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58831996	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60608001	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs613040	0.83[AMR][1000 genomes]
rs61652825	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7847185	0.89[AFR][1000 genomes]
rs7860897	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189400-98197400	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
3	chr9:98189800-98206600	Weak transcription	Pancreas	Pancrea
4	chr9:98193800-98197800	Enhancers	Fetal Heart	heart
5	chr9:98194800-98206600	Weak transcription	Left Ventricle	heart
6	chr9:98196000-98200600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:98196400-98197000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr9:98196400-98197000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:98196400-98197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:98196400-98197000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:98196400-98197000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:98196400-98197000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:98196400-98197000	Flanking Active TSS	HepG2	liver
14	chr9:98196400-98197200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:98196400-98197200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:98196400-98197200	Enhancers	Placenta	Placenta
17	chr9:98196400-98197400	Flanking Active TSS	K562	blood
18	chr9:98196600-98197000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr9:98196600-98197200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:98196600-98197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:98196600-98197200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:98196600-98197200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:98196600-98197200	Enhancers	Fetal Lung	lung
24	chr9:98196600-98197200	Enhancers	Fetal Stomach	stomach
25	chr9:98196600-98197400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:98196800-98197000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
27	chr9:98196800-98197000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr9:98196800-98197000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr9:98196800-98197000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr9:98196800-98197200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr9:98196800-98197200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:98196800-98197200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:98196800-98197200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr9:98196800-98197200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
35	chr9:98196800-98206600	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:98196800-98207000	Weak transcription	Primary T cells fromperipheralblood	blood

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