Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:98192901..98194795-chr9:98272389..98274432,2	K562	blood:
2	chr9:98194162..98198925-chr9:98199539..98203355,6	K562	blood:
3	chr9:98192831..98199026-chr9:98270440..98274596,9	K562	blood:
4	chr9:98193214..98197304-chr9:98277800..98280363,5	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16909856	0.87[EUR][1000 genomes]
rs16909859	0.87[EUR][1000 genomes]
rs16909865	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28421389	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28485160	0.88[EUR][1000 genomes]
rs28563972	0.94[EUR][1000 genomes]
rs28615951	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357520	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs357523	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs357524	0.84[ASN][1000 genomes]
rs357530	1.00[AFR][1000 genomes]
rs357531	1.00[AFR][1000 genomes]
rs357535	1.00[AFR][1000 genomes]
rs357541	1.00[AFR][1000 genomes]
rs357545	1.00[AFR][1000 genomes]
rs357555	1.00[AFR][1000 genomes]
rs357556	0.83[AMR][1000 genomes]
rs357560	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs357561	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs357562	0.83[AMR][1000 genomes]
rs419574	1.00[AFR][1000 genomes]
rs57247461	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58831996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60608001	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs613040	0.87[AMR][1000 genomes]
rs61652825	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189400-98196600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr9:98189400-98197400	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:98189600-98196400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
5	chr9:98189800-98206600	Weak transcription	Pancreas	Pancrea
6	chr9:98192400-98194600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:98193200-98195600	Weak transcription	K562	blood
8	chr9:98193200-98196600	Weak transcription	Fetal Lung	lung
9	chr9:98193400-98196800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:98193800-98197800	Enhancers	Fetal Heart	heart

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