Variant report

Variant	rs35755826
Chromosome Location	chr4:86958576-86958577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86728075..86730663-chr4:86957838..86959662,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004712	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10011390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020650	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10034271	1.00[ASN][1000 genomes]
rs10516763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103861	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13114632	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1436522	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1436524	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1541998	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17008675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2043648	0.97[EUR][1000 genomes]
rs2043650	0.98[EUR][1000 genomes]
rs2060588	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2589518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28398988	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28538338	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34498081	1.00[ASN][1000 genomes]
rs34725089	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34836858	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34929575	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35833770	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35893712	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36047328	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3775166	0.96[EUR][1000 genomes]
rs3775168	0.98[EUR][1000 genomes]
rs3775169	0.98[EUR][1000 genomes]
rs4345173	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4351013	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4382028	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4446299	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4479697	0.98[EUR][1000 genomes]
rs6531890	0.93[EUR][1000 genomes]
rs6531891	0.98[EUR][1000 genomes]
rs6531893	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66502717	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6856450	0.98[EUR][1000 genomes]
rs7670470	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7691896	0.96[EUR][1000 genomes]
rs7692460	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307014	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
9	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:86953800-86959600	Enhancers	HUVEC	blood vessel
11	chr4:86954600-86959000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:86954600-86960400	Weak transcription	Pancreas	Pancrea
13	chr4:86954600-86960600	Weak transcription	Left Ventricle	heart
14	chr4:86954800-86959000	Weak transcription	Fetal Lung	lung
15	chr4:86954800-86960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:86955000-86959200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:86955000-86960400	Weak transcription	Fetal Stomach	stomach
18	chr4:86955000-86964400	Weak transcription	Brain Anterior Caudate	brain
19	chr4:86955000-86966400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:86955200-86960200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:86955200-86962600	Weak transcription	Aorta	Aorta
23	chr4:86955200-86964400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:86955200-86964800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:86955200-86965000	Weak transcription	Right Atrium	heart
26	chr4:86955200-86966600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:86955200-86971000	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:86955600-86963000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:86956200-86969600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:86956600-86958800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr4:86956800-86960000	Enhancers	Fetal Heart	heart
33	chr4:86957800-86958600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:86958000-86959200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:86958200-86959000	Weak transcription	HSMMtube	muscle
36	chr4:86958200-86959200	Weak transcription	Primary T cells from cord blood	blood
37	chr4:86958200-86975600	Weak transcription	Fetal Brain Female	brain
38	chr4:86958400-86958600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:86958400-86959000	Enhancers	NH-A	brain
40	chr4:86958400-86959400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links