Variant report

Variant	rs36047328
Chromosome Location	chr4:86945656-86945657
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86936705..86937415-chr4:86944933..86945745,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10004712	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10009942	1.00[ASN][1000 genomes]
rs10011390	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025882	1.00[ASN][1000 genomes]
rs10033283	1.00[ASN][1000 genomes]
rs10516763	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103861	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110593	1.00[ASN][1000 genomes]
rs13114632	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436522	0.96[EUR][1000 genomes]
rs1436524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541998	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008675	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011341	1.00[ASN][1000 genomes]
rs2043648	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2043650	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2060588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2575674	1.00[ASN][1000 genomes]
rs2589518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398988	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28409011	0.83[ASN][1000 genomes]
rs28538338	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660296	1.00[ASN][1000 genomes]
rs28756326	1.00[ASN][1000 genomes]
rs34725089	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34836858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34929575	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35755826	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35833770	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35893712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971482	1.00[ASN][1000 genomes]
rs3775166	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3775168	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3775169	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4345173	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351013	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4382028	0.96[EUR][1000 genomes]
rs4446299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4479697	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6531890	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6531891	0.97[EUR][1000 genomes]
rs6531893	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66502717	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821840	1.00[ASN][1000 genomes]
rs6848433	1.00[ASN][1000 genomes]
rs6856450	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71603477	1.00[ASN][1000 genomes]
rs71603479	1.00[ASN][1000 genomes]
rs7659520	1.00[ASN][1000 genomes]
rs7660160	1.00[ASN][1000 genomes]
rs7670470	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670681	1.00[ASN][1000 genomes]
rs7677101	1.00[ASN][1000 genomes]
rs7691896	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7692460	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307014	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
5	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
6	chr4:86935200-86949200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:86936000-86948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
9	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:86936600-86948000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
14	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:86938600-86945800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:86938600-86949000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
19	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
21	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach
22	chr4:86944600-86954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:86945000-86946400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:86945200-86946000	Enhancers	Primary hematopoietic stem cells	blood
26	chr4:86945200-86946600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:86945400-86946200	Enhancers	HUVEC	blood vessel
28	chr4:86945400-86946400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr4:86945400-86946400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr4:86945400-86946600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:86945600-86946000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links