Variant report

Variant	rs28756326
Chromosome Location	chr4:87011736-87011737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10004712	1.00[ASN][1000 genomes]
rs10009942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011390	1.00[ASN][1000 genomes]
rs10020650	1.00[ASN][1000 genomes]
rs10025882	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033283	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034271	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10516763	1.00[ASN][1000 genomes]
rs13103861	1.00[ASN][1000 genomes]
rs13110593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114632	1.00[ASN][1000 genomes]
rs1436524	1.00[ASN][1000 genomes]
rs1541998	1.00[ASN][1000 genomes]
rs17008675	1.00[ASN][1000 genomes]
rs17011341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060588	0.83[ASN][1000 genomes]
rs2575674	1.00[ASN][1000 genomes]
rs2589518	1.00[ASN][1000 genomes]
rs28398988	1.00[ASN][1000 genomes]
rs28409011	0.83[ASN][1000 genomes]
rs28538338	1.00[ASN][1000 genomes]
rs28660296	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498081	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34725089	1.00[ASN][1000 genomes]
rs34836858	1.00[ASN][1000 genomes]
rs34929575	1.00[ASN][1000 genomes]
rs35833770	1.00[ASN][1000 genomes]
rs35893712	1.00[ASN][1000 genomes]
rs35971482	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047328	1.00[ASN][1000 genomes]
rs4345173	1.00[ASN][1000 genomes]
rs4351013	1.00[ASN][1000 genomes]
rs4446299	1.00[ASN][1000 genomes]
rs6531893	1.00[ASN][1000 genomes]
rs66502717	1.00[ASN][1000 genomes]
rs6821840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848433	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603477	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603479	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660160	1.00[ASN][1000 genomes]
rs7670470	1.00[ASN][1000 genomes]
rs7670681	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677101	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692460	1.00[ASN][1000 genomes]
rs9307014	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87004000-87028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:87005000-87050400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:87005400-87028200	Weak transcription	Ovary	ovary
4	chr4:87005400-87028400	Weak transcription	Fetal Stomach	stomach
5	chr4:87005600-87023000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:87005600-87026200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:87005600-87031200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:87005600-87035200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:87009200-87027400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:87009400-87011800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:87009400-87011800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:87010200-87011800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:87010200-87012200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:87010400-87011800	Enhancers	Fetal Lung	lung
15	chr4:87010400-87012800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:87010400-87012800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:87010800-87035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:87011000-87011800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:87011000-87012000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:87011200-87013600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:87011400-87011800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:87011400-87035600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:87011600-87013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:87011600-87023000	Weak transcription	Brain Anterior Caudate	brain

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