Variant report

Variant	rs7659520
Chromosome Location	chr4:87004148-87004149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86996065..86997848-chr4:87003738..87005825,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10004712	1.00[ASN][1000 genomes]
rs10009942	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011390	1.00[ASN][1000 genomes]
rs10020650	1.00[ASN][1000 genomes]
rs10025882	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033283	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034271	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10516763	1.00[ASN][1000 genomes]
rs13103861	1.00[ASN][1000 genomes]
rs13110593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114632	1.00[ASN][1000 genomes]
rs1436524	1.00[ASN][1000 genomes]
rs1541998	1.00[ASN][1000 genomes]
rs17008675	1.00[ASN][1000 genomes]
rs17011341	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060588	0.83[ASN][1000 genomes]
rs2575674	1.00[ASN][1000 genomes]
rs2589518	1.00[ASN][1000 genomes]
rs28398988	1.00[ASN][1000 genomes]
rs28409011	0.83[ASN][1000 genomes]
rs28538338	1.00[ASN][1000 genomes]
rs28660296	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498081	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34725089	1.00[ASN][1000 genomes]
rs34836858	1.00[ASN][1000 genomes]
rs34929575	1.00[ASN][1000 genomes]
rs35833770	1.00[ASN][1000 genomes]
rs35893712	1.00[ASN][1000 genomes]
rs35971482	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047328	1.00[ASN][1000 genomes]
rs4345173	1.00[ASN][1000 genomes]
rs4351013	1.00[ASN][1000 genomes]
rs4446299	1.00[ASN][1000 genomes]
rs6531893	1.00[ASN][1000 genomes]
rs66502717	1.00[ASN][1000 genomes]
rs6821840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848433	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603477	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603479	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660160	1.00[ASN][1000 genomes]
rs7670470	1.00[ASN][1000 genomes]
rs7670681	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677101	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692460	1.00[ASN][1000 genomes]
rs9307014	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87002400-87004400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:87002600-87005800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:87003200-87005600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:87003600-87004600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
5	chr4:87003600-87005000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
6	chr4:87003600-87005400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:87003600-87005400	ZNF genes & repeats	Fetal Kidney	kidney
8	chr4:87003600-87005400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr4:87003600-87005600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:87003800-87005000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:87003800-87005000	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr4:87003800-87005200	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr4:87003800-87005200	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr4:87003800-87005200	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr4:87003800-87005200	ZNF genes & repeats	Fetal Lung	lung
16	chr4:87003800-87005400	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr4:87003800-87005400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:87003800-87005600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr4:87004000-87005200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:87004000-87005200	ZNF genes & repeats	Ovary	ovary
21	chr4:87004000-87005400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:87004000-87005400	ZNF genes & repeats	Aorta	Aorta
23	chr4:87004000-87005400	ZNF genes & repeats	Fetal Stomach	stomach
24	chr4:87004000-87005600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:87004000-87028400	Weak transcription	Stomach Smooth Muscle	stomach

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