Variant report
| Variant | rs357821 |
|---|---|
| Chromosome Location | chr4:59993359-59993360 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1002012 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1002013 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1973511 | 0.86[AFR][1000 genomes] |
| rs357817 | 0.86[AFR][1000 genomes] |
| rs357819 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357822 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357827 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357828 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357833 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357836 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357837 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357838 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs357848 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs371989 | 0.84[AFR][1000 genomes] |
| rs372580 | 0.86[AFR][1000 genomes] |
| rs399068 | 0.86[AFR][1000 genomes] |
| rs415904 | 0.86[AFR][1000 genomes] |
| rs436198 | 0.86[AFR][1000 genomes] |
| rs4493619 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58277587 | 0.82[AFR][1000 genomes] |
| rs6551610 | 0.86[AFR][1000 genomes] |
| rs6551611 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011113 | chr4:59647956-60263029 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv879045 | chr4:59889898-60005301 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv879046 | chr4:59897952-59998696 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879047 | chr4:59900914-60005301 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv829946 | chr4:59913771-60083867 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv526492 | chr4:59978132-59998696 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:59992200-59993800 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr4:59992200-59995000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
