Variant report

Variant	rs357832
Chromosome Location	chr4:59988396-59988397
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13128704	0.88[AFR][1000 genomes]
rs1874356	0.81[AFR][1000 genomes]
rs2088196	0.81[AFR][1000 genomes]
rs3105225	0.86[AFR][1000 genomes]
rs357823	0.94[AFR][1000 genomes]
rs364737	0.86[AFR][1000 genomes]
rs959972	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879045	chr4:59889898-60005301	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879046	chr4:59897952-59998696	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879047	chr4:59900914-60005301	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2763787	chr4:59974071-59990876	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv526492	chr4:59978132-59998696	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59987000-59991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:59987200-59990800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:59988200-59988400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:59988200-59988400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:59988200-59988600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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