Variant report

Variant	rs35792409
Chromosome Location	chr13:88620500-88620501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10492673	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492674	0.91[ASN][1000 genomes]
rs11616526	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11616538	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11616754	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11618337	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11618394	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11840142	0.83[EUR][1000 genomes]
rs11841508	0.85[EUR][1000 genomes]
rs11842226	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12866694	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12870626	0.82[EUR][1000 genomes]
rs12871674	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12875091	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12877514	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1413282	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1470242	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2083697	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2099863	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2099864	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2119921	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2165697	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33978169	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34007365	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34433510	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57131353	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs71419712	0.82[EUR][1000 genomes]
rs7320569	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7329247	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7329487	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7330066	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7334641	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7335084	0.82[EUR][1000 genomes]
rs7335881	0.85[EUR][1000 genomes]
rs7984415	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7989241	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7992325	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7995995	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7997074	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562632	chr13:88532287-88622740	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv900787	chr13:88554160-88680762	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv983534	chr13:88617783-88623130	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88619600-88622200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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