Variant report

Variant	rs11841508
Chromosome Location	chr13:88683971-88683972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10492673	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11616526	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11616538	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11616754	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11618337	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11618394	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11840142	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842226	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12323122	0.80[ASN][1000 genomes]
rs12866694	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12870626	0.87[EUR][1000 genomes]
rs12871674	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12875091	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12877514	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13378379	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1413280	0.82[ASN][1000 genomes]
rs1413282	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413284	0.81[ASN][1000 genomes]
rs1413285	0.81[ASN][1000 genomes]
rs1470241	0.81[ASN][1000 genomes]
rs1470242	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1470244	0.81[ASN][1000 genomes]
rs1470245	0.81[ASN][1000 genomes]
rs1591223	0.81[ASN][1000 genomes]
rs1831883	0.82[ASN][1000 genomes]
rs1855395	0.91[ASN][1000 genomes]
rs2083697	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2099863	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2099864	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119921	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2165697	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34007365	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34433510	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35792409	0.85[EUR][1000 genomes]
rs6491807	0.81[ASN][1000 genomes]
rs6491808	0.81[ASN][1000 genomes]
rs6491809	0.81[ASN][1000 genomes]
rs6491851	0.82[ASN][1000 genomes]
rs71419712	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7319105	0.81[ASN][1000 genomes]
rs7320569	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7329247	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7329487	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7330066	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7334641	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7334817	0.81[ASN][1000 genomes]
rs7335084	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7335881	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7984415	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7984609	0.81[ASN][1000 genomes]
rs7989241	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7990249	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7991737	0.86[ASN][1000 genomes]
rs7992325	0.85[EUR][1000 genomes]
rs7995995	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7997074	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8000413	0.81[ASN][1000 genomes]
rs8001104	0.81[ASN][1000 genomes]
rs9514209	0.91[ASN][1000 genomes]
rs9519209	0.91[ASN][1000 genomes]
rs9555037	0.91[ASN][1000 genomes]
rs9558262	0.91[ASN][1000 genomes]
rs9558263	0.91[ASN][1000 genomes]
rs9582837	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9586282	0.81[ASN][1000 genomes]
rs9586457	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9586478	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88683400-88684800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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