Variant report

Variant	rs1855395
Chromosome Location	chr13:88704392-88704393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10492673	0.81[ASN][1000 genomes]
rs11616526	0.82[ASN][1000 genomes]
rs11616538	0.82[ASN][1000 genomes]
rs11616754	0.82[ASN][1000 genomes]
rs11618337	0.83[ASN][1000 genomes]
rs11618394	0.81[ASN][1000 genomes]
rs11841508	0.91[ASN][1000 genomes]
rs11842226	0.83[ASN][1000 genomes]
rs12866694	0.82[ASN][1000 genomes]
rs12871674	0.82[ASN][1000 genomes]
rs12875091	0.82[ASN][1000 genomes]
rs12877514	0.83[ASN][1000 genomes]
rs13378379	0.82[ASN][1000 genomes]
rs1413280	0.90[ASN][1000 genomes]
rs1413282	0.82[ASN][1000 genomes]
rs1413284	0.89[ASN][1000 genomes]
rs1413285	0.89[ASN][1000 genomes]
rs1470241	0.89[ASN][1000 genomes]
rs1470242	0.81[ASN][1000 genomes]
rs1470244	0.89[ASN][1000 genomes]
rs1470245	0.89[ASN][1000 genomes]
rs1529361	0.83[EUR][1000 genomes]
rs1541772	0.81[EUR][1000 genomes]
rs1591223	0.88[ASN][1000 genomes]
rs1831883	0.90[ASN][1000 genomes]
rs1855390	0.81[EUR][1000 genomes]
rs1855391	0.83[EUR][1000 genomes]
rs1855392	0.83[EUR][1000 genomes]
rs2083697	0.83[ASN][1000 genomes]
rs2099863	0.83[ASN][1000 genomes]
rs2099864	0.83[ASN][1000 genomes]
rs2119921	0.82[ASN][1000 genomes]
rs2165697	0.82[ASN][1000 genomes]
rs2346339	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2346340	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34007365	0.82[ASN][1000 genomes]
rs34433510	0.82[ASN][1000 genomes]
rs4772584	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4772600	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61959190	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6491807	0.89[ASN][1000 genomes]
rs6491808	0.89[ASN][1000 genomes]
rs6491809	0.89[ASN][1000 genomes]
rs7319105	0.89[ASN][1000 genomes]
rs7319127	0.82[EUR][1000 genomes]
rs7320569	0.82[ASN][1000 genomes]
rs7329247	0.82[ASN][1000 genomes]
rs7329487	0.82[ASN][1000 genomes]
rs7330066	0.81[ASN][1000 genomes]
rs7334641	0.82[ASN][1000 genomes]
rs7334817	0.88[ASN][1000 genomes]
rs7984415	0.82[ASN][1000 genomes]
rs7984609	0.89[ASN][1000 genomes]
rs7989241	0.82[ASN][1000 genomes]
rs7990249	0.82[ASN][1000 genomes]
rs7992532	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7995995	0.82[ASN][1000 genomes]
rs7997074	0.82[ASN][1000 genomes]
rs7999115	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8000413	0.89[ASN][1000 genomes]
rs8001104	0.89[ASN][1000 genomes]
rs9300906	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9514209	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9514240	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9514256	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9519209	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9519267	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9519269	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9519309	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9519311	0.84[EUR][1000 genomes]
rs9519323	0.82[EUR][1000 genomes]
rs9519324	0.82[EUR][1000 genomes]
rs9555037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9558262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9558263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9558267	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9558268	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9582837	0.82[ASN][1000 genomes]
rs9586282	0.89[ASN][1000 genomes]
rs9586457	0.81[ASN][1000 genomes]
rs9586474	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88704000-88704400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:88704000-88704600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:88704200-88704400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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