Variant report

Variant	rs1591223
Chromosome Location	chr13:88653707-88653708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10492673	0.88[ASN][1000 genomes]
rs10492674	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11616526	0.92[ASN][1000 genomes]
rs11616538	0.92[ASN][1000 genomes]
rs11616754	0.92[ASN][1000 genomes]
rs11618337	0.94[ASN][1000 genomes]
rs11618394	0.91[ASN][1000 genomes]
rs11840142	0.89[ASN][1000 genomes]
rs11841508	0.81[ASN][1000 genomes]
rs11842226	0.94[ASN][1000 genomes]
rs12866694	0.92[ASN][1000 genomes]
rs12870626	0.88[ASN][1000 genomes]
rs12871674	0.92[ASN][1000 genomes]
rs12875091	0.92[ASN][1000 genomes]
rs12877514	0.94[ASN][1000 genomes]
rs1413280	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1413282	0.90[ASN][1000 genomes]
rs1413284	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1413285	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470241	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470242	0.88[ASN][1000 genomes]
rs1470244	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470245	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1831883	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1855395	0.88[ASN][1000 genomes]
rs2083697	0.94[ASN][1000 genomes]
rs2099863	0.94[ASN][1000 genomes]
rs2099864	0.94[ASN][1000 genomes]
rs2119921	0.92[ASN][1000 genomes]
rs2165697	0.92[ASN][1000 genomes]
rs34007365	0.92[ASN][1000 genomes]
rs34433510	0.92[ASN][1000 genomes]
rs6491807	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6491808	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6491809	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71419712	0.88[ASN][1000 genomes]
rs7319105	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7320569	0.92[ASN][1000 genomes]
rs7329247	0.92[ASN][1000 genomes]
rs7329487	0.92[ASN][1000 genomes]
rs7330066	0.90[ASN][1000 genomes]
rs7334641	0.92[ASN][1000 genomes]
rs7334817	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335084	0.88[ASN][1000 genomes]
rs7335881	0.87[ASN][1000 genomes]
rs7984415	0.92[ASN][1000 genomes]
rs7984609	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7989241	0.92[ASN][1000 genomes]
rs7992325	0.80[ASN][1000 genomes]
rs7995995	0.92[ASN][1000 genomes]
rs7997074	0.92[ASN][1000 genomes]
rs7999853	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8000413	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8000511	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8001104	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9514209	0.88[ASN][1000 genomes]
rs9519209	0.88[ASN][1000 genomes]
rs9555037	0.88[ASN][1000 genomes]
rs9558262	0.88[ASN][1000 genomes]
rs9558263	0.88[ASN][1000 genomes]
rs9586282	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900787	chr13:88554160-88680762	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3447768	chr13:88637000-88673742	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88651400-88653800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:88652800-88657200	Weak transcription	HSMMtube	muscle
3	chr13:88653400-88670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:88653600-88657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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