Variant report
| Variant | rs7999853 |
|---|---|
| Chromosome Location | chr13:88667993-88667994 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10492674 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1413280 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1413284 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1413285 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470241 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470244 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470245 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1591223 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1831883 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2346340 | 0.85[ASN][1000 genomes] |
| rs4772584 | 0.91[ASN][1000 genomes] |
| rs6491807 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6491808 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6491809 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7319105 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7334817 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7984609 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8000413 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8000511 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8001104 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9586282 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900787 | chr13:88554160-88680762 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900788 | chr13:88554160-88690980 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900789 | chr13:88554160-88699143 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900790 | chr13:88585928-88891870 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv900791 | chr13:88623302-88771495 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv900792 | chr13:88623302-88871759 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3447768 | chr13:88637000-88673742 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:88653400-88670400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
