Variant report

Variant	rs35798604
Chromosome Location	chr1:85716979-85716980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:85412729..85414874-chr1:85716251..85718921,2	MCF-7	breast:
2	chr1:85660381..85662955-chr1:85716611..85718297,2	K562	blood:
3	chr1:85664645..85668633-chr1:85715062..85719068,6	K562	blood:
4	chr1:85666785..85669663-chr1:85715100..85717431,2	K562	blood:
5	chr1:85689750..85692180-chr1:85716712..85719328,3	K562	blood:
6	chr1:85716134..85717775-chr22:19949405..19952183,2	MCF-7	breast:
7	chr1:85712540..85714788-chr1:85715420..85717609,2	K562	blood:
8	chr1:85716330..85718015-chr1:85741774..85743352,2	MCF-7	breast:
9	chr1:85689750..85691517-chr1:85716712..85719328,2	K562	blood:
10	chr1:85708208..85712302-chr1:85713167..85718221,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000142867	Chromatin interaction
ENSG00000265087	Chromatin interaction
ENSG00000097096	Chromatin interaction
ENSG00000223653	Chromatin interaction
ENSG00000093010	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1060843	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11161564	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11161581	0.96[ASN][1000 genomes]
rs11161583	0.92[ASN][1000 genomes]
rs12065528	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12066982	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12068389	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12068788	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12084232	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12086970	0.89[ASN][1000 genomes]
rs12087340	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12562182	0.81[AMR][1000 genomes]
rs12563515	0.96[ASN][1000 genomes]
rs12726649	0.96[ASN][1000 genomes]
rs12743302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12744565	0.96[ASN][1000 genomes]
rs12746169	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17124345	1.00[ASN][1000 genomes]
rs34151221	0.83[EUR][1000 genomes]
rs35204975	0.86[EUR][1000 genomes]
rs35486093	1.00[ASN][1000 genomes]
rs35783363	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36116171	0.96[ASN][1000 genomes]
rs4074156	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258258	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693229	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9887811	0.94[ASN][1000 genomes]
rs9887812	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9887879	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85706800-85718400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:85707000-85719400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:85707000-85719600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:85707000-85721600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:85707000-85722800	Weak transcription	HepG2	liver
6	chr1:85707000-85723000	Weak transcription	Stomach Mucosa	stomach
7	chr1:85707800-85724400	Weak transcription	Lung	lung
8	chr1:85709800-85724200	Weak transcription	Colonic Mucosa	Colon
9	chr1:85710400-85721400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:85710400-85724000	Weak transcription	Ovary	ovary
11	chr1:85710400-85724000	Weak transcription	Right Ventricle	heart
12	chr1:85710600-85717000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:85710600-85719800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:85710600-85722600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:85710600-85723800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:85710800-85717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:85710800-85717200	Weak transcription	HUVEC	blood vessel
18	chr1:85710800-85717400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:85710800-85717400	Weak transcription	NH-A	brain
20	chr1:85710800-85718200	Weak transcription	Psoas Muscle	Psoas
21	chr1:85710800-85724000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:85710800-85724200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:85710800-85724400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:85710800-85724600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr1:85711400-85717000	Weak transcription	Fetal Lung	lung
26	chr1:85711400-85717000	Weak transcription	Left Ventricle	heart
27	chr1:85711400-85718200	Weak transcription	Hela-S3	cervix
28	chr1:85711400-85719800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:85711600-85717000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:85711600-85723800	Weak transcription	HSMMtube	muscle
31	chr1:85711800-85719600	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:85711800-85719800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:85712000-85717000	Weak transcription	Fetal Kidney	kidney
34	chr1:85712000-85717000	Weak transcription	HSMM	muscle
35	chr1:85712000-85723000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:85712000-85723000	Weak transcription	NHLF	lung
37	chr1:85712200-85717000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:85712200-85717000	Weak transcription	NHDF-Ad	bronchial
39	chr1:85712200-85722800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:85712200-85724000	Weak transcription	Fetal Stomach	stomach
41	chr1:85713000-85722800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:85713200-85724000	Weak transcription	Thymus	Thymus
43	chr1:85714000-85718200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr1:85714000-85719200	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:85714200-85717400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:85714400-85719600	Weak transcription	A549	lung
47	chr1:85714400-85721400	Weak transcription	Brain Anterior Caudate	brain
48	chr1:85714600-85717400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:85714600-85724200	Weak transcription	Gastric	stomach
50	chr1:85714800-85717000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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