Variant report

Variant	rs35802271
Chromosome Location	chr7:141132099-141132100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10952500	1.00[ASN][1000 genomes]
rs12154683	1.00[ASN][1000 genomes]
rs34917874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897704	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv3429325	chr7:141064185-141196253	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141129600-141136400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:141129600-141144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:141130000-141132800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:141130600-141133400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:141130800-141132600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:141130800-141135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:141131000-141132600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:141131000-141132600	Weak transcription	Left Ventricle	heart
9	chr7:141131000-141133600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:141131000-141135200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:141131000-141135200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:141131000-141135200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:141131200-141136000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:141131400-141133200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:141131400-141135400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:141131400-141140600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:141131600-141132800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:141131600-141135200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:141131800-141132800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:141131800-141135000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:141131800-141135000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:141131800-141135200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:141131800-141135200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:141132000-141132400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:141132000-141133000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:141132000-141133600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:141132000-141135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:141132000-141135400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:141132000-141136000	Weak transcription	Fetal Brain Female	brain

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