Variant report

Variant	rs10952500
Chromosome Location	chr7:141130890-141130891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10262855	1.00[CHB][hapmap]
rs12154683	1.00[ASN][1000 genomes]
rs34917874	1.00[ASN][1000 genomes]
rs35802271	1.00[ASN][1000 genomes]
rs55897704	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv3429325	chr7:141064185-141196253	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141129200-141132000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:141129600-141131200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr7:141129600-141132000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:141129600-141136400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:141129600-141144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:141129800-141131000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:141129800-141131000	Enhancers	Left Ventricle	heart
8	chr7:141129800-141131400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:141129800-141131800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:141129800-141132000	Enhancers	Fetal Brain Female	brain
11	chr7:141130000-141131000	Enhancers	Brain Germinal Matrix	brain
12	chr7:141130000-141132800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:141130200-141131400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr7:141130200-141131600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:141130400-141131000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:141130400-141131000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:141130400-141131000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:141130400-141131000	Enhancers	Brain Anterior Caudate	brain
19	chr7:141130400-141131200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:141130400-141131400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr7:141130400-141131600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:141130400-141131600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr7:141130400-141131600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr7:141130600-141131000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:141130600-141131400	Enhancers	Brain Angular Gyrus	brain
26	chr7:141130600-141131400	Enhancers	Right Atrium	heart
27	chr7:141130600-141133400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:141130800-141131000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr7:141130800-141131000	Enhancers	Brain Cingulate Gyrus	brain
30	chr7:141130800-141131200	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:141130800-141131400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr7:141130800-141132600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:141130800-141135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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