Variant report

Variant	rs35805189
Chromosome Location	chr2:145759511-145759512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1006923	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10206585	0.85[ASN][1000 genomes]
rs10928241	0.95[ASN][1000 genomes]
rs1125128	0.95[ASN][1000 genomes]
rs12474485	0.95[ASN][1000 genomes]
rs12476923	0.95[ASN][1000 genomes]
rs12477111	0.95[ASN][1000 genomes]
rs12691704	0.95[ASN][1000 genomes]
rs12992411	0.95[ASN][1000 genomes]
rs12995180	0.95[ASN][1000 genomes]
rs13009019	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13015800	0.95[ASN][1000 genomes]
rs13384504	0.95[ASN][1000 genomes]
rs13389190	0.95[ASN][1000 genomes]
rs13428423	0.95[ASN][1000 genomes]
rs17407477	0.91[AFR][1000 genomes]
rs1830318	0.95[ASN][1000 genomes]
rs1830320	0.95[ASN][1000 genomes]
rs1881409	0.95[ASN][1000 genomes]
rs1881410	0.95[ASN][1000 genomes]
rs2056751	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2663966	0.89[ASN][1000 genomes]
rs34029033	0.95[ASN][1000 genomes]
rs34372836	0.89[ASN][1000 genomes]
rs35462154	0.95[ASN][1000 genomes]
rs55855159	1.00[AFR][1000 genomes]
rs6430076	0.95[ASN][1000 genomes]
rs6430078	0.89[ASN][1000 genomes]
rs6707062	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6721988	0.95[ASN][1000 genomes]
rs6747171	0.95[ASN][1000 genomes]
rs6747275	0.95[ASN][1000 genomes]
rs6749506	0.95[ASN][1000 genomes]
rs7423637	0.95[ASN][1000 genomes]
rs7562803	0.95[ASN][1000 genomes]
rs786244	0.80[EUR][1000 genomes]
rs787427	0.85[ASN][1000 genomes]
rs957292	0.95[ASN][1000 genomes]
rs957293	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145754800-145759600	Weak transcription	Ovary	ovary
2	chr2:145754800-145763200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:145754800-145763600	Weak transcription	Aorta	Aorta
4	chr2:145757800-145763000	Weak transcription	NHDF-Ad	bronchial
5	chr2:145758000-145764400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:145758200-145763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:145758200-145764200	Weak transcription	A549	lung
8	chr2:145758400-145765000	Weak transcription	Adipose Nuclei	Adipose

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