Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1006923	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13009019	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1371046	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17407414	1.00[CHB][hapmap];0.81[GIH][hapmap]
rs17407477	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1968526	0.83[EUR][1000 genomes]
rs2165021	0.82[ASN][1000 genomes]
rs2579022	0.83[EUR][1000 genomes]
rs35805189	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55855159	0.83[AFR][1000 genomes]
rs6430071	1.00[CHB][hapmap];0.83[GIH][hapmap]
rs6707062	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786218	0.82[EUR][1000 genomes]
rs786222	0.83[EUR][1000 genomes]
rs786229	0.83[EUR][1000 genomes]
rs786239	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs786242	0.82[EUR][1000 genomes]
rs786247	0.82[EUR][1000 genomes]
rs786248	0.82[EUR][1000 genomes]
rs786252	0.83[EUR][1000 genomes]
rs786253	0.83[EUR][1000 genomes]
rs786257	0.85[EUR][1000 genomes]
rs786260	0.83[EUR][1000 genomes]
rs786272	0.86[EUR][1000 genomes]
rs812530	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145710000-145722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: