Variant report

Variant	rs786260
Chromosome Location	chr2:145721472-145721473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1371046	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1371048	0.91[ASN][1000 genomes]
rs1528188	0.91[ASN][1000 genomes]
rs1528189	0.91[ASN][1000 genomes]
rs17407414	1.00[CHB][hapmap];0.86[GIH][hapmap]
rs17407477	1.00[CHB][hapmap]
rs1968526	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1980383	0.91[ASN][1000 genomes]
rs2056751	0.83[EUR][1000 genomes]
rs2579022	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55855159	0.90[ASN][1000 genomes]
rs59766404	0.91[ASN][1000 genomes]
rs6430071	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap]
rs6707062	0.83[EUR][1000 genomes]
rs6735063	0.91[ASN][1000 genomes]
rs726857	0.91[ASN][1000 genomes]
rs786218	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs786222	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786228	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs786229	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs786239	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs786242	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs786244	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs786247	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs786248	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs786252	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs786253	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs786257	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs786272	0.84[EUR][1000 genomes]
rs812530	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs813684	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145710000-145722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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