Variant report
| Variant | rs786257 |
|---|---|
| Chromosome Location | chr2:145726447-145726448 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1371046 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1968526 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2056751 | 0.85[EUR][1000 genomes] |
| rs2579022 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6707062 | 0.85[EUR][1000 genomes] |
| rs786218 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs786222 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs786228 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs786229 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs786239 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs786242 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs786244 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs786247 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs786248 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs786252 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs786253 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs786260 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs786272 | 0.86[EUR][1000 genomes] |
| rs812530 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs813684 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002563 | chr2:145182201-145863253 | Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv535957 | chr2:145182201-145863253 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv932113 | chr2:145515124-145844491 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv834398 | chr2:145659419-145830156 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:145724200-145726600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr2:145726000-145733200 | Weak transcription | Fetal Lung | lung |
