Variant report

Variant	rs726857
Chromosome Location	chr2:145753424-145753425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1371048	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528188	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528189	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980382	0.84[AMR][1000 genomes]
rs1980383	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165021	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55855159	0.82[ASN][1000 genomes]
rs59766404	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735063	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786222	0.91[ASN][1000 genomes]
rs786242	0.82[ASN][1000 genomes]
rs786247	0.82[ASN][1000 genomes]
rs786260	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145748600-145756800	Weak transcription	Dnd41	blood
2	chr2:145749400-145753600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:145751600-145754200	Weak transcription	Ovary	ovary
4	chr2:145753000-145753600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:145753000-145753600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr2:145753000-145754200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr2:145753000-145754400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:145753200-145753600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:145753200-145754200	Flanking Active TSS	Osteobl	bone
10	chr2:145753400-145753600	Active TSS	Adipose Nuclei	Adipose
11	chr2:145753400-145753600	Active TSS	NHDF-Ad	bronchial
12	chr2:145753400-145753800	Enhancers	Brain Angular Gyrus	brain
13	chr2:145753400-145753800	Active TSS	Right Atrium	heart
14	chr2:145753400-145754000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:145753400-145754000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr2:145753400-145754600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:145753400-145754600	Enhancers	HUVEC	blood vessel
18	chr2:145753400-145754800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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