Variant report

Variant	rs35825568
Chromosome Location	chr10:950760-950761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr10:950533-951119	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:947200-954920	K562	blood:	n/a	n/a
3	POLR2A	chr10:950698-951170	Hela-S3	cervix:	n/a	n/a
4	BACH1	chr10:950622-950871	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAFK	chr10:950719-950829	K562	blood:	n/a	n/a
6	BACH1	chr10:950640-950905	K562	blood:	n/a	n/a
7	CEBPB	chr10:950714-950865	K562	blood:	n/a	n/a
8	POLR2A	chr10:950420-950877	HepG2	liver:	n/a	n/a
9	POLR2A	chr10:950611-950931	K562	blood:	n/a	n/a
10	MAFK	chr10:950663-950847	HepG2	liver:	n/a	n/a
11	POLR2A	chr10:950567-950802	K562	blood:	n/a	n/a
12	MAFF	chr10:950651-950878	K562	blood:	n/a	n/a
13	POLR2A	chr10:950627-950947	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr10:950568-951140	GM12878	blood:	n/a	n/a
15	POLR2A	chr10:950596-950909	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:950294..953048-chr10:969646..972009,2	K562	blood:
2	chr10:950268..953530-chr10:975004..979141,4	MCF-7	breast:

Variant related genes	Relation type
LARP4B	TF binding region
ENSG00000107929	Chromatin interaction
ENSG00000229869	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10128148	0.80[AFR][1000 genomes]
rs1013505	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508208	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904577	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904580	1.00[ASN][1000 genomes]
rs10904581	1.00[ASN][1000 genomes]
rs10904583	1.00[ASN][1000 genomes]
rs10904584	1.00[ASN][1000 genomes]
rs1106064	1.00[ASN][1000 genomes]
rs11253458	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253459	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11253460	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253462	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11253465	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253468	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253473	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253475	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253483	0.82[AFR][1000 genomes]
rs11253485	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253488	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253492	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253493	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253494	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253495	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11253499	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253509	1.00[ASN][1000 genomes]
rs11253511	1.00[ASN][1000 genomes]
rs11253513	1.00[ASN][1000 genomes]
rs11253517	1.00[ASN][1000 genomes]
rs11253520	1.00[ASN][1000 genomes]
rs11253521	1.00[ASN][1000 genomes]
rs11812170	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812523	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813210	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815185	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816064	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817793	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818288	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818325	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240651	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244253	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244355	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249634	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249828	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250936	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250937	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251396	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12254002	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258388	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259338	1.00[ASN][1000 genomes]
rs12259720	1.00[ASN][1000 genomes]
rs12259801	1.00[ASN][1000 genomes]
rs12260800	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261911	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264390	1.00[ASN][1000 genomes]
rs12264711	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267709	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354639	1.00[ASN][1000 genomes]
rs12359645	1.00[ASN][1000 genomes]
rs12360270	1.00[ASN][1000 genomes]
rs12761424	1.00[ASN][1000 genomes]
rs12762973	1.00[ASN][1000 genomes]
rs12763396	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764024	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765174	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766381	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769431	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769873	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770190	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778891	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783472	1.00[ASN][1000 genomes]
rs13377166	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341741	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341742	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539174	1.00[ASN][1000 genomes]
rs1555899	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159950	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159970	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050944	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34254874	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34270014	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284130	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405399	1.00[ASN][1000 genomes]
rs34433840	1.00[ASN][1000 genomes]
rs34847097	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35174953	1.00[ASN][1000 genomes]
rs35394603	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35567307	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35637113	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35693858	1.00[ASN][1000 genomes]
rs35968821	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4522091	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56318703	1.00[ASN][1000 genomes]
rs56347655	1.00[ASN][1000 genomes]
rs61830929	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61830932	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66631678	0.87[AMR][1000 genomes]
rs7067865	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074642	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077278	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778215	0.87[AMR][1000 genomes]
rs72778229	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765867	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
3	chr10:925400-950800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:927600-972600	Weak transcription	Hela-S3	cervix
5	chr10:928000-951600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:928000-954200	Weak transcription	Brain Germinal Matrix	brain
7	chr10:928000-954200	Weak transcription	Fetal Brain Female	brain
8	chr10:928000-963200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:928000-966400	Weak transcription	Small Intestine	intestine
10	chr10:929000-952200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:929200-952200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:929400-955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:929400-975800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:929400-976400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:929800-951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:929800-954200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:930000-954400	Weak transcription	Colonic Mucosa	Colon
18	chr10:930600-952400	Weak transcription	HMEC	breast
19	chr10:930600-953600	Weak transcription	NH-A	brain
20	chr10:930800-953600	Weak transcription	NHDF-Ad	bronchial
21	chr10:931200-952200	Weak transcription	Primary B cells from cord blood	blood
22	chr10:931400-952400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:931400-953200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:931400-956000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:931600-951800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:931600-952400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:931600-953600	Weak transcription	Fetal Thymus	thymus
28	chr10:931600-965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:931600-967400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:931800-952400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:931800-952800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:931800-954000	Weak transcription	Thymus	Thymus
33	chr10:931800-954200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:931800-957600	Weak transcription	Aorta	Aorta
35	chr10:932000-953400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:932200-955800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:934200-952800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:935400-964000	Weak transcription	Psoas Muscle	Psoas
39	chr10:935800-952600	Weak transcription	Fetal Intestine Large	intestine
40	chr10:936000-952400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:937600-952200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:940000-952200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:940000-970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:940200-967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:940400-952200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:940400-955800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:942000-952400	Weak transcription	Left Ventricle	heart
48	chr10:942200-951400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:942200-951600	Weak transcription	Gastric	stomach
50	chr10:942200-951600	Weak transcription	Pancreas	Pancrea

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