Variant report

Variant	rs35827794
Chromosome Location	chr15:31898334-31898335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149222127..149223797-chr15:31897038..31899511,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11852947	0.86[EUR][1000 genomes]
rs12324512	0.93[EUR][1000 genomes]
rs12900845	1.00[EUR][1000 genomes]
rs12901569	0.93[EUR][1000 genomes]
rs12901746	1.00[EUR][1000 genomes]
rs12901826	1.00[EUR][1000 genomes]
rs12905154	0.85[EUR][1000 genomes]
rs13380070	0.93[EUR][1000 genomes]
rs16955808	1.00[EUR][1000 genomes]
rs16956871	0.93[EUR][1000 genomes]
rs1847243	0.93[EUR][1000 genomes]
rs2455705	0.93[EUR][1000 genomes]
rs28439279	0.93[EUR][1000 genomes]
rs28857331	1.00[EUR][1000 genomes]
rs34181495	1.00[EUR][1000 genomes]
rs34326912	1.00[EUR][1000 genomes]
rs34398864	0.93[EUR][1000 genomes]
rs34448788	0.93[EUR][1000 genomes]
rs34549002	0.93[EUR][1000 genomes]
rs34658780	0.93[EUR][1000 genomes]
rs34896179	1.00[EUR][1000 genomes]
rs34919150	0.93[EUR][1000 genomes]
rs34936239	0.85[EUR][1000 genomes]
rs35523973	1.00[EUR][1000 genomes]
rs35879417	1.00[EUR][1000 genomes]
rs57342244	1.00[EUR][1000 genomes]
rs58249094	0.86[EUR][1000 genomes]
rs59475354	1.00[EUR][1000 genomes]
rs59477018	1.00[EUR][1000 genomes]
rs71474672	0.85[EUR][1000 genomes]
rs71476545	0.93[EUR][1000 genomes]
rs71476546	1.00[EUR][1000 genomes]
rs71476552	1.00[EUR][1000 genomes]
rs71476554	1.00[EUR][1000 genomes]
rs7167067	0.85[EUR][1000 genomes]
rs7168719	1.00[EUR][1000 genomes]
rs7176683	0.93[EUR][1000 genomes]
rs7177470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177983	0.93[EUR][1000 genomes]
rs7182770	1.00[EUR][1000 genomes]
rs74012563	0.93[EUR][1000 genomes]
rs7496896	0.86[EUR][1000 genomes]
rs8024264	0.86[EUR][1000 genomes]
rs8024973	1.00[EUR][1000 genomes]
rs8027168	0.85[EUR][1000 genomes]
rs8032083	1.00[EUR][1000 genomes]
rs8042234	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2422205	chr15:31808878-32375021	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2422269	chr15:31808878-32375021	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2422351	chr15:31808878-32375021	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2422455	chr15:31808878-32375021	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1045095	chr15:31835044-32439113	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv903846	chr15:31854847-32534037	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv469569	chr15:31886000-31974400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv2751530	chr15:31897012-32511555	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31877800-31900800	Weak transcription	Pancreas	Pancrea
2	chr15:31896800-31898800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:31897000-31898600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:31897000-31898600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:31897000-31899400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:31897000-31899600	Enhancers	Ovary	ovary
7	chr15:31897000-31899600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:31897200-31901400	Weak transcription	Right Atrium	heart
9	chr15:31897400-31898600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:31897400-31898800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:31897400-31899400	Enhancers	Brain Anterior Caudate	brain
12	chr15:31897400-31899600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr15:31897400-31899600	Enhancers	NHLF	lung
14	chr15:31897400-31899600	Enhancers	Osteobl	bone
15	chr15:31897400-31902000	Enhancers	Brain Substantia Nigra	brain
16	chr15:31897400-31902400	Enhancers	Brain Hippocampus Middle	brain
17	chr15:31897600-31898400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:31897600-31898400	Flanking Active TSS	Hela-S3	cervix
19	chr15:31897600-31899000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:31897600-31899600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:31897600-31899600	Enhancers	NHDF-Ad	bronchial
22	chr15:31897600-31900000	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:31897600-31901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:31897600-31901800	Weak transcription	Gastric	stomach
25	chr15:31897800-31898600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:31897800-31898800	Enhancers	Fetal Stomach	stomach
27	chr15:31897800-31899000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:31897800-31899600	Enhancers	NHEK	skin
29	chr15:31897800-31901400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:31897800-31901600	Weak transcription	Spleen	Spleen
31	chr15:31898000-31898400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:31898000-31898800	Flanking Active TSS	A549	lung
33	chr15:31898000-31899000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:31898000-31899000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:31898000-31899400	Enhancers	NH-A	brain
36	chr15:31898000-31900200	Enhancers	Stomach Smooth Muscle	stomach
37	chr15:31898000-31900800	Enhancers	Brain Angular Gyrus	brain
38	chr15:31898000-31901200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:31898200-31899400	Weak transcription	Placenta	Placenta
40	chr15:31898200-31900600	Weak transcription	Esophagus	oesophagus
41	chr15:31898200-31901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:31898200-31901400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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