Variant report

Variant	rs8032083
Chromosome Location	chr15:31908280-31908281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11071318	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs11632840	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs11852947	0.86[EUR][1000 genomes]
rs12324512	0.93[EUR][1000 genomes]
rs12900845	1.00[EUR][1000 genomes]
rs12901569	0.93[EUR][1000 genomes]
rs12901746	1.00[EUR][1000 genomes]
rs12901826	1.00[EUR][1000 genomes]
rs12905154	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13380070	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16955808	1.00[EUR][1000 genomes]
rs16955884	1.00[CEU][hapmap]
rs16956753	1.00[TSI][hapmap]
rs16956871	0.93[EUR][1000 genomes]
rs1847243	0.93[EUR][1000 genomes]
rs2338891	1.00[CEU][hapmap]
rs2455705	0.93[EUR][1000 genomes]
rs28439279	0.93[EUR][1000 genomes]
rs28857331	1.00[EUR][1000 genomes]
rs34181495	1.00[EUR][1000 genomes]
rs34326912	1.00[EUR][1000 genomes]
rs34398864	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34448788	0.93[EUR][1000 genomes]
rs34549002	0.93[EUR][1000 genomes]
rs34658780	0.93[EUR][1000 genomes]
rs34896179	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34919150	0.93[EUR][1000 genomes]
rs34936239	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35523973	1.00[EUR][1000 genomes]
rs35827794	1.00[EUR][1000 genomes]
rs35879417	1.00[EUR][1000 genomes]
rs57342244	1.00[EUR][1000 genomes]
rs58249094	0.86[EUR][1000 genomes]
rs59475354	1.00[EUR][1000 genomes]
rs59477018	1.00[EUR][1000 genomes]
rs71474672	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71476545	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71476546	1.00[EUR][1000 genomes]
rs71476552	1.00[EUR][1000 genomes]
rs71476554	1.00[EUR][1000 genomes]
rs7167067	0.85[EUR][1000 genomes]
rs7168719	1.00[EUR][1000 genomes]
rs7176683	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7177470	1.00[EUR][1000 genomes]
rs7177983	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7182770	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74012563	0.93[EUR][1000 genomes]
rs7496896	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs8024264	0.86[EUR][1000 genomes]
rs8024973	1.00[EUR][1000 genomes]
rs8027168	0.85[EUR][1000 genomes]
rs8042234	1.00[EUR][1000 genomes]
rs966398	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2422205	chr15:31808878-32375021	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2422269	chr15:31808878-32375021	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv2422351	chr15:31808878-32375021	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2422455	chr15:31808878-32375021	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1045095	chr15:31835044-32439113	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv903846	chr15:31854847-32534037	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv469569	chr15:31886000-31974400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2751530	chr15:31897012-32511555	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv976915	chr15:31898697-31986377	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1040340	chr15:31900747-32439113	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31908000-31908400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:31908200-31908400	ZNF genes & repeats	Gastric	stomach

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