Variant report

Variant	rs35840835
Chromosome Location	chr10:19005836-19005837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10734067	0.81[ASN][1000 genomes]
rs10764702	0.82[ASN][1000 genomes]
rs10826460	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11007019	0.88[EUR][1000 genomes]
rs11007082	0.81[ASN][1000 genomes]
rs12573426	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12764009	0.85[EUR][1000 genomes]
rs12776470	0.84[EUR][1000 genomes]
rs12783508	0.83[EUR][1000 genomes]
rs7477705	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7899447	0.81[ASN][1000 genomes]
rs7900792	0.84[EUR][1000 genomes]
rs7906282	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908908	0.84[EUR][1000 genomes]
rs7912040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550122	chr10:18993303-19017942	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19002600-19008600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:19002800-19007800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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