Variant report

Variant	rs7899447
Chromosome Location	chr10:19086833-19086834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10826460	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11007019	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11007082	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12573426	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764009	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12776470	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12783508	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35840835	0.81[ASN][1000 genomes]
rs7477705	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900792	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7906282	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908908	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7912040	0.80[ASN][1000 genomes]
rs9787596	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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