Variant report

Variant	rs35842913
Chromosome Location	chr3:143050085-143050086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143049665..143050247-chr3:143392915..143393904,2	K562	blood:
2	chr3:143047507..143050166-chr3:143127472..143129524,2	K562	blood:
3	chr3:142839696..142842108-chr3:143048440..143050143,2	K562	blood:
4	chr3:143047197..143050151-chr3:143065282..143067644,2	K562	blood:
5	chr3:143049101..143052451-chr3:143056626..143059965,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10804692	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061014	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074801	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501631	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609727	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610217	1.00[ASN][1000 genomes]
rs17637392	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812200	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875462	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143045600-143050600	Enhancers	Fetal Lung	lung
2	chr3:143046600-143050400	Enhancers	Fetal Kidney	kidney
3	chr3:143046600-143051800	Weak transcription	Dnd41	blood
4	chr3:143046600-143056200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143047200-143050800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:143047400-143050200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:143047400-143050200	Enhancers	Fetal Brain Female	brain
8	chr3:143047600-143051200	Enhancers	NHDF-Ad	bronchial
9	chr3:143047800-143050800	Enhancers	Fetal Brain Male	brain
10	chr3:143048400-143051200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:143048400-143051200	Enhancers	HUVEC	blood vessel
12	chr3:143048600-143050200	Enhancers	HSMM	muscle
13	chr3:143048600-143050400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:143048600-143050800	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:143048600-143051000	Enhancers	Adipose Nuclei	Adipose
16	chr3:143048800-143050200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:143048800-143050200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:143048800-143050200	Enhancers	Fetal Stomach	stomach
19	chr3:143048800-143050800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:143049000-143050800	Enhancers	Brain Substantia Nigra	brain
21	chr3:143049200-143050600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:143049200-143050800	Enhancers	Brain Anterior Caudate	brain
23	chr3:143049200-143053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:143049200-143056200	Weak transcription	HSMMtube	muscle
25	chr3:143049200-143056400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:143049200-143061200	Weak transcription	Fetal Thymus	thymus
27	chr3:143049400-143050400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:143049400-143051200	Enhancers	Brain Hippocampus Middle	brain
29	chr3:143049600-143050200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:143049600-143050600	Weak transcription	Liver	Liver
31	chr3:143049800-143050400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:143049800-143051200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr3:143049800-143051400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:143050000-143050200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr3:143050000-143050200	Enhancers	Esophagus	oesophagus
36	chr3:143050000-143050200	Enhancers	Lung	lung
37	chr3:143050000-143050200	Enhancers	Ovary	ovary
38	chr3:143050000-143050200	Enhancers	NH-A	brain
39	chr3:143050000-143050400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr3:143050000-143050600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:143050000-143050600	Enhancers	Primary hematopoietic stem cells	blood
42	chr3:143050000-143050600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:143050000-143050600	Enhancers	Brain Angular Gyrus	brain
44	chr3:143050000-143050600	Enhancers	Psoas Muscle	Psoas
45	chr3:143050000-143050600	Enhancers	Right Atrium	heart
46	chr3:143050000-143050600	Enhancers	Spleen	Spleen
47	chr3:143050000-143051400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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