Variant report

Variant	rs1609727
Chromosome Location	chr3:143061634-143061635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143061262..143062878-chr3:143065854..143067728,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10804692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11716489	1.00[JPT][hapmap]
rs11717437	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11718728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11915421	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11915761	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11927016	1.00[CHB][hapmap]
rs13061014	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072761	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13074801	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099124	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1501624	0.84[EUR][1000 genomes]
rs1501631	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604377	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1604380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1610217	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16853767	1.00[CHB][hapmap]
rs17637392	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1812200	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1995356	1.00[CHB][hapmap]
rs35842913	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7627844	1.00[CHB][hapmap]
rs7642361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7652557	1.00[CHB][hapmap]
rs894176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9850863	1.00[CHB][hapmap]
rs9862119	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143056800-143062400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143060200-143062600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:143061000-143061800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:143061200-143062400	Enhancers	Fetal Thymus	thymus
5	chr3:143061400-143063600	Enhancers	HUVEC	blood vessel
6	chr3:143061400-143064000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:143061600-143064200	Enhancers	Dnd41	blood

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