Variant report

Variant	rs9862119
Chromosome Location	chr3:143022141-143022142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10804692	1.00[CHB][hapmap]
rs11711068	1.00[CHB][hapmap]
rs11717437	1.00[CHB][hapmap]
rs11718728	1.00[CHB][hapmap]
rs11915421	1.00[CHB][hapmap]
rs11915761	1.00[CHB][hapmap]
rs11927016	1.00[CHB][hapmap]
rs13061014	1.00[CHB][hapmap]
rs13072761	1.00[CHB][hapmap]
rs13074801	1.00[CHB][hapmap]
rs13099124	1.00[CHB][hapmap]
rs1501631	1.00[CHB][hapmap]
rs1604377	1.00[CHB][hapmap]
rs1604380	1.00[CHB][hapmap]
rs1609727	1.00[CHB][hapmap]
rs1610217	1.00[CHB][hapmap]
rs17637392	1.00[CHB][hapmap]
rs1808882	1.00[CHB][hapmap]
rs1812200	1.00[CHB][hapmap]
rs1875462	1.00[CHB][hapmap]
rs1995356	1.00[CHB][hapmap]
rs35090761	1.00[ASN][1000 genomes]
rs4839627	1.00[CHB][hapmap]
rs55906926	1.00[ASN][1000 genomes]
rs62267818	1.00[ASN][1000 genomes]
rs6779211	1.00[ASN][1000 genomes]
rs73159638	1.00[ASN][1000 genomes]
rs73867637	1.00[ASN][1000 genomes]
rs7627844	1.00[CHB][hapmap]
rs7642361	1.00[CHB][hapmap]
rs7652557	1.00[CHB][hapmap]
rs894176	1.00[CHB][hapmap]
rs9850863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv520125	chr3:143020870-143029022	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143008000-143025000	Weak transcription	Gastric	stomach
2	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
3	chr3:143017000-143022400	Enhancers	Fetal Thymus	thymus
4	chr3:143017000-143022600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:143018200-143026400	Weak transcription	GM12878-XiMat	blood
6	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:143019000-143022600	Enhancers	Dnd41	blood
8	chr3:143019600-143026600	Enhancers	Fetal Lung	lung
9	chr3:143020200-143023200	Enhancers	K562	blood
10	chr3:143020400-143022600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:143020400-143022800	Enhancers	Spleen	Spleen
12	chr3:143020600-143022600	Enhancers	NHDF-Ad	bronchial
13	chr3:143020800-143022600	Enhancers	Placenta	Placenta
14	chr3:143020800-143022800	Enhancers	Fetal Muscle Leg	muscle
15	chr3:143020800-143023200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:143020800-143023400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:143021000-143022200	Enhancers	HMEC	breast
18	chr3:143021000-143022600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:143021000-143026600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:143021200-143022400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:143021200-143022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:143021200-143029000	Weak transcription	Primary T cells from cord blood	blood
23	chr3:143021400-143022200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:143021400-143022200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr3:143021400-143022200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr3:143021400-143022200	Enhancers	NHEK	skin
27	chr3:143021400-143022400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr3:143021400-143022400	Enhancers	Right Atrium	heart
29	chr3:143021400-143022600	Enhancers	Adipose Nuclei	Adipose
30	chr3:143021400-143022800	Enhancers	Left Ventricle	heart
31	chr3:143021400-143024200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:143021600-143022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:143021600-143026400	Weak transcription	Lung	lung
34	chr3:143021800-143022200	Weak transcription	Psoas Muscle	Psoas
35	chr3:143021800-143022600	Enhancers	HSMMtube	muscle
36	chr3:143021800-143029000	Weak transcription	Fetal Kidney	kidney
37	chr3:143022000-143022200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:143022000-143022400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:143022000-143022400	Enhancers	Right Ventricle	heart
40	chr3:143022000-143022400	Enhancers	Osteobl	bone
41	chr3:143022000-143023600	Enhancers	HUVEC	blood vessel
42	chr3:143022000-143023800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:143022000-143023800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:143022000-143024200	Weak transcription	Esophagus	oesophagus
45	chr3:143022000-143025000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:143022000-143025200	Weak transcription	HSMM	muscle
47	chr3:143022000-143025600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:143022000-143026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:143022000-143026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:143022000-143026400	Weak transcription	NH-A	brain

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