Variant report

Variant	rs55906926
Chromosome Location	chr3:143159873-143159874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513210	1.00[ASN][1000 genomes]
rs11705715	1.00[ASN][1000 genomes]
rs11716124	1.00[ASN][1000 genomes]
rs16853767	1.00[ASN][1000 genomes]
rs16853866	1.00[ASN][1000 genomes]
rs16853903	1.00[ASN][1000 genomes]
rs2083528	1.00[ASN][1000 genomes]
rs35090761	1.00[ASN][1000 genomes]
rs4024563	1.00[ASN][1000 genomes]
rs5003886	1.00[ASN][1000 genomes]
rs62267818	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6784124	1.00[ASN][1000 genomes]
rs73867637	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850863	1.00[ASN][1000 genomes]
rs9862119	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1011088	chr3:143135891-143163169	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143143200-143161600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143147600-143164200	Enhancers	Fetal Thymus	thymus
3	chr3:143149600-143163600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:143152000-143162200	Weak transcription	Adipose Nuclei	Adipose
5	chr3:143155400-143162600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:143155600-143163200	Enhancers	Thymus	Thymus
7	chr3:143155800-143169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:143156000-143161400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:143156000-143161600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:143156400-143161600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:143158000-143163600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:143159000-143161600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:143159200-143161400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:143159200-143162000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:143159400-143161600	Weak transcription	K562	blood
16	chr3:143159600-143163200	Weak transcription	Lung	lung
17	chr3:143159600-143200800	Weak transcription	Esophagus	oesophagus
18	chr3:143159800-143160800	Weak transcription	Dnd41	blood
19	chr3:143159800-143161000	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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