Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11705715	1.00[ASN][1000 genomes]
rs11711068	1.00[CHB][hapmap]
rs11716124	0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs11717437	1.00[CHB][hapmap]
rs11718728	1.00[CHB][hapmap]
rs11915421	1.00[CHB][hapmap]
rs11915761	1.00[CHB][hapmap]
rs11927016	1.00[CHB][hapmap]
rs12633124	0.92[ASW][hapmap];0.87[CEU][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs13072761	1.00[CHB][hapmap]
rs13099124	1.00[CHB][hapmap]
rs1525861	0.92[ASW][hapmap];0.87[CEU][hapmap];0.84[LWK][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap]
rs1604377	1.00[CHB][hapmap]
rs1604380	1.00[CHB][hapmap]
rs16853767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853866	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16853903	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2083528	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4024563	1.00[CHB][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs4839627	1.00[CHB][hapmap]
rs5003886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55906926	1.00[ASN][1000 genomes]
rs57077045	0.81[EUR][1000 genomes]
rs58563413	0.81[EUR][1000 genomes]
rs62267818	1.00[ASN][1000 genomes]
rs6779379	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784124	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72999736	0.81[EUR][1000 genomes]
rs73867637	1.00[ASN][1000 genomes]
rs7627844	1.00[CHB][hapmap]
rs7652557	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:143262000-143279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:143270600-143304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:143273800-143279800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:143277400-143279600	Weak transcription	Gastric	stomach
6	chr3:143277400-143282400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:143277400-143292400	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:143277400-143301200	Weak transcription	Esophagus	oesophagus
9	chr3:143277400-143303600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:143277600-143284200	Weak transcription	Brain Substantia Nigra	brain
12	chr3:143277600-143292400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:143277800-143279200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:143278000-143279000	Enhancers	Fetal Lung	lung
15	chr3:143278200-143284000	Weak transcription	Monocytes-CD14+_RO01746	blood

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