Variant report

Variant	rs16853903
Chromosome Location	chr3:143312749-143312750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143310510..143312815-chr3:143313075..143315988,2	K562	blood:
2	chr3:143312590..143314218-chr3:143316587..143318859,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513210	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11705715	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711068	1.00[CHB][hapmap]
rs11716124	0.90[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718728	1.00[CHB][hapmap]
rs11915421	1.00[CHB][hapmap]
rs11927016	1.00[CHB][hapmap]
rs16853767	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16853866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083528	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4024563	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5003886	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55906926	1.00[ASN][1000 genomes]
rs62267818	1.00[ASN][1000 genomes]
rs6784124	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867637	1.00[ASN][1000 genomes]
rs7627844	1.00[CHB][hapmap]
rs7652557	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143296200-143313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
6	chr3:143306000-143314000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:143307200-143313000	Weak transcription	Fetal Thymus	thymus
8	chr3:143309800-143316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:143310000-143316200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:143310200-143315600	Weak transcription	K562	blood
11	chr3:143311000-143314400	Enhancers	Duodenum Mucosa	Duodenum
12	chr3:143311000-143314400	Enhancers	Stomach Mucosa	stomach
13	chr3:143311400-143316400	Weak transcription	Placenta	Placenta
14	chr3:143312000-143313000	Enhancers	Pancreas	Pancrea
15	chr3:143312000-143314400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:143312600-143312800	Enhancers	Small Intestine	intestine
17	chr3:143312600-143313600	Enhancers	Gastric	stomach
18	chr3:143312600-143313800	Enhancers	Fetal Lung	lung
19	chr3:143312600-143314000	Enhancers	Fetal Intestine Large	intestine
20	chr3:143312600-143314000	Enhancers	Fetal Intestine Small	intestine
21	chr3:143312600-143314800	Enhancers	Rectal Mucosa Donor 31	rectum

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