Variant report

Variant	rs35844460
Chromosome Location	chr6:28394045-28394046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28380846..28382983-chr6:28391973..28394917,2	K562	blood:
2	chr6:28392901..28395106-chr6:28398520..28400756,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSCAN23-1	chr6:28392120-28394123	NONHSAT108462

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34083373	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34409925	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34481509	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34979126	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs35814746	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35889911	0.86[EUR][1000 genomes]
rs35901019	0.82[EUR][1000 genomes]
rs35999889	0.86[EUR][1000 genomes]
rs71559077	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71559084	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71559087	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385400-28402000	Weak transcription	Fetal Kidney	kidney
4	chr6:28385400-28402200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:28385600-28410800	Weak transcription	Lung	lung
6	chr6:28386000-28402200	Weak transcription	Osteobl	bone
7	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:28386200-28395800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:28386600-28397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:28386800-28402200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:28387600-28394200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:28387800-28395400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
14	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
15	chr6:28388400-28399200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:28389200-28410200	Weak transcription	NHLF	lung
17	chr6:28389400-28403200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:28389600-28398200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
25	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:28391000-28395200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:28391400-28402400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
29	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
30	chr6:28391600-28397600	Weak transcription	Ovary	ovary
31	chr6:28391600-28401800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:28391600-28402000	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:28391600-28402000	Weak transcription	Left Ventricle	heart
34	chr6:28391600-28402000	Weak transcription	Psoas Muscle	Psoas
35	chr6:28391600-28402200	Weak transcription	HSMMtube	muscle
36	chr6:28391600-28402200	Weak transcription	NH-A	brain
37	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
38	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
39	chr6:28392000-28395200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:28392000-28397800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:28392000-28398200	Weak transcription	HSMM	muscle
42	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:28392000-28410400	Weak transcription	NHEK	skin
44	chr6:28392200-28402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
46	chr6:28392400-28394600	ZNF genes & repeats	Fetal Brain Female	brain
47	chr6:28392400-28397800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:28392400-28410000	Weak transcription	HMEC	breast
49	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:28392600-28394200	ZNF genes & repeats	Brain Germinal Matrix	brain

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