Variant report

Variant	rs35901019
Chromosome Location	chr6:28494225-28494226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28494196-28494246	HAEpiC	amniotic membrane:	n/a
2	chr6:28494196-28494246	AG04449	skin:	fetal
3	chr6:28494196-28494246	HCM	heart:	n/a
4	chr6:28494196-28494246	HMEC	breast:	n/a
5	chr6:28494196-28494246	GM06990	blood:	n/a
6	chr6:28494196-28494246	BE2_C	brain:	n/a
7	chr6:28494196-28494246	ECC-1	luminal epithelium:	n/a
8	chr6:28494196-28494246	SK-N-SH_RA	brain:	n/a
9	chr6:28494196-28494246	HRCEpiC	kidney:	n/a
10	chr6:28494196-28494246	AG10803	skin:	n/a
11	chr6:28494196-28494246	HCF	heart:	n/a
12	chr6:28494196-28494246	HL-60	blood:	n/a
13	chr6:28494196-28494246	GM12892	blood:	n/a
14	chr6:28494196-28494246	Hepatocyte	liver:	n/a
15	chr6:28494196-28494246	HIPEpiC	eye:	n/a
16	chr6:28494196-28494246	NHDF-neo	bronchial:	n/a
17	chr6:28494196-28494246	CMK	blood:	n/a
18	chr6:28494196-28494246	LNCaP	prostate:	n/a
19	chr6:28494196-28494246	IMR90	lung:	fetal
20	chr6:28494196-28494246	A549	lung:	n/a
21	chr6:28494196-28494246	SK-N-MC	brain:	n/a
22	chr6:28494196-28494246	HNPCEpiC	eye:	n/a
23	chr6:28494196-28494246	NB4	blood:	n/a
24	chr6:28494196-28494246	SAEC	small airway:	n/a
25	chr6:28494196-28494246	HEEpiC	esophagus:	n/a
26	chr6:28494196-28494246	NH-A	brain:	n/a
27	chr6:28494196-28494246	MCF-7	breast:	n/a
28	chr6:28494196-28494246	RPTEC	kidney:	n/a
29	chr6:28494196-28494246	PrEC	prostate:	n/a
30	chr6:28494196-28494246	HCPEpiC	choroid plexus:	n/a
31	chr6:28494196-28494246	GM19239	blood:	n/a
32	chr6:28494196-28494246	GM12891	blood:	n/a
33	chr6:28494196-28494246	Caco-2	colon:	n/a
34	chr6:28494196-28494246	ovcar-3	ovarian:	n/a
35	chr6:28494196-28494246	SKMC	muscle:	n/a
36	chr6:28494196-28494246	MCF10A-Er-Src	breast:	n/a
37	chr6:28494196-28494246	AG09319	gingival:	n/a
38	chr6:28494196-28494246	H1-hESC	embryonic stem cell:	embryo
39	chr6:28494196-28494246	T-47D	breast:	n/a
40	chr6:28494196-28494246	K562	blood:	n/a
41	chr6:28494196-28494246	NHBE	bronchial:	n/a
42	chr6:28494196-28494246	HUVEC	blood vessel:	n/a
43	chr6:28494196-28494246	PFSK-1	brain:	n/a
44	chr6:28494196-28494246	HCT-116	colon:	n/a
45	chr6:28494196-28494246	SK-N-SH	brain:	n/a
46	chr6:28494196-28494246	HEK293	kidney:	embryo
47	chr6:28494196-28494246	ProgFib	skin:	n/a
48	chr6:28494196-28494246	HRE	kidney:	n/a
49	chr6:28494196-28494246	HepG2	liver:	n/a
50	chr6:28494196-28494246	AG04450	lung:	fetal

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28366385..28368709-chr6:28493666..28495776,2	K562	blood:

No data

Variant related genes	Relation type
GPX5	CpG island
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34083373	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34409925	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34979126	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35814746	1.00[AMR][1000 genomes]
rs35844460	0.82[EUR][1000 genomes]
rs35889911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35999889	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71559077	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71559084	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71559087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28493000-28494600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:28494000-28499200	Weak transcription	K562	blood

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