Variant report

Variant	rs35856165
Chromosome Location	chr1:179679600-179679601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:179678382-179680264	SK-N-SH	brain:	n/a	chr1:179679606-179679620

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179677443..179680322-chr12:62995877..62997836,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221547	TF binding region
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

rs_ID	r²[population]
rs10913868	0.86[EUR][1000 genomes]
rs10913870	0.86[EUR][1000 genomes]
rs10913871	0.86[EUR][1000 genomes]
rs10913872	0.86[EUR][1000 genomes]
rs12037882	0.86[EUR][1000 genomes]
rs12403719	0.86[EUR][1000 genomes]
rs12403967	0.86[EUR][1000 genomes]
rs12562455	0.86[EUR][1000 genomes]
rs12565113	0.86[EUR][1000 genomes]
rs12737143	0.86[EUR][1000 genomes]
rs2318386	0.86[EUR][1000 genomes]
rs4266841	0.86[EUR][1000 genomes]
rs4565670	0.85[EUR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179677200-179680200	Enhancers	HUVEC	blood vessel
2	chr1:179677400-179680000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:179677400-179680200	Enhancers	Adipose Nuclei	Adipose
4	chr1:179677600-179680200	Enhancers	Left Ventricle	heart
5	chr1:179677800-179680000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:179678200-179679800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:179678200-179680000	Enhancers	Stomach Mucosa	stomach
8	chr1:179678400-179679600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:179678400-179679800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:179678400-179679800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:179678400-179680000	Enhancers	Primary T cells from cord blood	blood
12	chr1:179678400-179680000	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:179678400-179680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:179678400-179680000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:179678400-179680200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:179678600-179679600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:179678600-179679600	Enhancers	Fetal Intestine Small	intestine
18	chr1:179678600-179679600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr1:179678600-179679800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:179678600-179679800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:179678600-179679800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:179678600-179679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:179678600-179679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:179678600-179679800	Enhancers	Fetal Thymus	thymus
25	chr1:179678600-179680000	Enhancers	Psoas Muscle	Psoas
26	chr1:179678600-179680200	Enhancers	GM12878-XiMat	blood
27	chr1:179678800-179679800	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr1:179678800-179680000	Enhancers	Colon Smooth Muscle	Colon
29	chr1:179678800-179680200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:179679200-179679600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:179679400-179679600	Enhancers	Small Intestine	intestine
32	chr1:179679600-179679800	Bivalent Enhancer	Small Intestine	intestine
33	chr1:179679600-179680000	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links