Variant report

Variant	rs10913872
Chromosome Location	chr1:179687834-179687835
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1052447	0.90[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10798718	0.90[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10798719	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10798720	0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10798721	0.89[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913874	0.81[JPT][hapmap];0.91[MEX][hapmap]
rs10913875	0.81[JPT][hapmap]
rs10913876	0.89[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913877	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913878	0.90[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913879	0.90[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11578918	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs12037882	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047821	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12403719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12403967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408874	0.90[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12408882	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12562455	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565113	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1498123	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs16854559	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs16854629	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs2245195	0.81[JPT][hapmap]
rs2318386	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2318389	0.90[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2454196	0.81[JPT][hapmap]
rs2487740	0.81[JPT][hapmap]
rs35856165	0.86[EUR][1000 genomes]
rs3843267	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs3845381	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3845382	0.84[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs3845383	0.81[JPT][hapmap]
rs3856045	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3897919	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3905117	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3909014	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3909015	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4266841	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4269737	0.84[EUR][1000 genomes]
rs4469684	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4511077	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4565670	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60556788	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61828370	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6663482	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7365663	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179687600-179688400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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