Variant report

Variant	rs10913879
Chromosome Location	chr1:179726432-179726433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1052447	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798718	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913868	0.90[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs10913870	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913871	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913872	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10913874	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10913875	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10913876	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10913877	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10913878	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11578918	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11588754	0.81[ASN][1000 genomes]
rs12037882	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12047821	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12403719	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12403967	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12408874	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408882	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562455	0.86[EUR][1000 genomes]
rs12565113	0.86[EUR][1000 genomes]
rs12737143	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs1391434	0.87[CEU][hapmap]
rs16854559	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs16854629	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2245195	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245610	0.85[ASN][1000 genomes]
rs2245702	0.85[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs2318386	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2318389	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2454193	0.88[ASN][1000 genomes]
rs2454195	0.99[ASN][1000 genomes]
rs2454196	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2454197	0.86[ASN][1000 genomes]
rs2487739	0.96[ASN][1000 genomes]
rs2487740	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2504032	0.82[ASN][1000 genomes]
rs2504033	0.82[ASN][1000 genomes]
rs2504034	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs2504035	0.85[ASN][1000 genomes]
rs2504038	0.84[ASN][1000 genomes]
rs2504039	0.99[ASN][1000 genomes]
rs2504040	0.99[ASN][1000 genomes]
rs2504041	0.99[ASN][1000 genomes]
rs2504042	0.99[ASN][1000 genomes]
rs2504043	0.85[ASN][1000 genomes]
rs2504048	0.85[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs2504049	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs2504053	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs3843267	0.90[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs3845381	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3845382	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3845383	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs3856045	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3897919	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs3905117	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs3909014	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3909015	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4266841	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4269737	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4469684	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4511077	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4565670	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4651050	0.96[ASN][1000 genomes]
rs60556788	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61828370	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6663482	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7365663	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179723600-179727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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