Variant report

Variant	rs16854559
Chromosome Location	chr1:179678611-179678612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179677443..179680322-chr12:62995877..62997836,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

rs_ID	r²[population]
rs1052447	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10798718	0.81[CEU][hapmap]
rs10798721	0.80[CEU][hapmap]
rs10913868	0.90[CEU][hapmap]
rs10913876	0.80[CEU][hapmap]
rs10913878	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10913879	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs11578918	0.80[CEU][hapmap]
rs12408874	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs12408882	0.80[CEU][hapmap]
rs12737143	0.90[CEU][hapmap]
rs1391434	0.94[CEU][hapmap]
rs16854629	0.80[CEU][hapmap]
rs2318389	0.81[CEU][hapmap]
rs3843267	0.90[CEU][hapmap];0.80[TSI][hapmap]
rs3845381	0.80[CEU][hapmap]
rs3897919	0.90[CEU][hapmap]
rs3905117	0.90[CEU][hapmap]
rs3909014	0.80[CEU][hapmap]
rs4511077	0.80[CEU][hapmap]
rs4652445	0.81[CHB][hapmap]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179677200-179680200	Enhancers	HUVEC	blood vessel
2	chr1:179677400-179680000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:179677400-179680200	Enhancers	Adipose Nuclei	Adipose
4	chr1:179677600-179680200	Enhancers	Left Ventricle	heart
5	chr1:179677800-179680000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:179678000-179678800	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:179678000-179678800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:179678200-179679200	Enhancers	Fetal Stomach	stomach
9	chr1:179678200-179679800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:179678200-179680000	Enhancers	Stomach Mucosa	stomach
11	chr1:179678400-179679200	Enhancers	Spleen	Spleen
12	chr1:179678400-179679600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:179678400-179679800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:179678400-179679800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:179678400-179680000	Enhancers	Primary T cells from cord blood	blood
16	chr1:179678400-179680000	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:179678400-179680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:179678400-179680000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:179678400-179680200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:179678600-179679000	Enhancers	Right Atrium	heart
21	chr1:179678600-179679200	Enhancers	Rectal Smooth Muscle	rectum
22	chr1:179678600-179679600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr1:179678600-179679600	Enhancers	Fetal Intestine Small	intestine
24	chr1:179678600-179679600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr1:179678600-179679800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr1:179678600-179679800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:179678600-179679800	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr1:179678600-179679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:179678600-179679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:179678600-179679800	Enhancers	Fetal Thymus	thymus
31	chr1:179678600-179680000	Enhancers	Psoas Muscle	Psoas
32	chr1:179678600-179680200	Enhancers	GM12878-XiMat	blood

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