Variant report

Variant	rs3897919
Chromosome Location	chr1:179696772-179696773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1052447	0.90[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10798718	0.90[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10798719	0.89[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10798720	0.89[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10798721	0.90[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913868	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913870	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913871	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913872	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913874	0.81[JPT][hapmap]
rs10913875	0.83[JPT][hapmap]
rs10913876	0.90[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913877	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913878	0.90[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913879	0.90[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11578918	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs12037882	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12047821	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12403719	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12403967	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12408874	0.90[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12408882	0.90[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12562455	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12565113	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12737143	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1391434	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1498123	0.82[CHB][hapmap]
rs16854559	0.90[CEU][hapmap]
rs16854629	0.90[CEU][hapmap];0.83[JPT][hapmap]
rs2245195	0.81[JPT][hapmap]
rs2318386	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2318389	0.90[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2454196	0.81[JPT][hapmap]
rs2487740	0.81[JPT][hapmap]
rs35856165	0.84[EUR][1000 genomes]
rs3843267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3845381	0.90[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3845382	0.85[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs3845383	0.81[JPT][hapmap]
rs3856045	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3905117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3909014	0.90[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3909015	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4266841	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4269737	0.86[EUR][1000 genomes]
rs4469684	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4511077	0.90[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4565670	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4651050	0.80[ASN][1000 genomes]
rs60556788	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61828370	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6663482	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7365663	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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